Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47520 375 / 4e-134 AtRABA5a RAB GTPase homolog A5A (.1) AT2G43130 278 / 8e-96 ARA4, AtRab11F, AtRABA5c, Ara-4 ARABIDOPSIS RAB GTPASE HOMOLOG A5C, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G31680 278 / 1e-95 AtRABA5d RAB GTPase homolog A5D (.1) AT1G05810 275 / 6e-94 ARA, Ara-1, AtRab11D, AtRABA5e ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) AT3G07410 272 / 4e-93 AtRABA5b RAB GTPase homolog A5B (.1) AT5G65270 253 / 2e-85 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 252 / 2e-85 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G16920 248 / 5e-84 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G47960 248 / 8e-84 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT1G07410 247 / 1e-83 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000536 [exp] 387 / 2e-138 AT5G47520 369 / 3e-131 RAB GTPase homolog A5A (.1) Lus10017558 [exp] 383 / 8e-137 AT5G47520 367 / 1e-130 RAB GTPase homolog A5A (.1) Lus10026731 [exp] 281 / 1e-96 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1) Lus10025516 [exp] 281 / 1e-96 AT2G31680 381 / 2e-136 RAB GTPase homolog A5D (.1) Lus10039051 [exp] 274 / 4e-95 AT5G47520 259 / 2e-89 RAB GTPase homolog A5A (.1) Lus10038226 [exp] 261 / 5e-89 AT1G05810 333 / 3e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Lus10025876 [exp] 260 / 2e-88 AT1G05810 331 / 1e-116 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Lus10000637 [exp] 258 / 1e-87 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 255 / 2e-86 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010300 [exp] 389 / 3e-139 AT5G47520 395 / 7e-142 RAB GTPase homolog A5A (.1) Potri.006G015400 [exp] 385 / 1e-137 AT5G47520 398 / 5e-143 RAB GTPase homolog A5A (.1) Potri.002G231800 [exp] 289 / 8e-100 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.014G150300 [exp] 285 / 2e-98 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.002G249500 [exp] 271 / 9e-93 AT1G05810 333 / 8e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) Potri.007G096000 [exp] 251 / 6e-85 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 250 / 1e-84 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.003G004100 [exp] 250 / 1e-84 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G057700 [exp] 245 / 1e-82 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G000400 [exp] 245 / 1e-82 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10038807 pacid=23150515 polypeptide=Lus10038807 locus=Lus10038807.g ID=Lus10038807.BGIv1.0 annot-version=v1.0 ATGGCATTTTACTCTCAAGAGGACAAGGCGGATGATTACCTGTTCAAGATAGTGTTAATTGGCGATTCGGCTGTTGGGAAGTCAAATTTACTGGCCAGGT TCGCCAGAGATGAGTTCCACCCCAATTCGAAATCAACCATAGGGGTCGAGTTCCAAACTCAGAAGATTGATATCAACGGGAAGGAAGTGAAAGCGCAGAT TTGGGACACTGCAGGTCAGGAGCGGTTTAGAGCCGTTACATCTGCATATTACAGAGGTGCCGTTGGAGCCCTTGTGGTCTATGATATCAGTAGACGCCAA ACTTTCGAAAGCATTGGCCGGTGGCTTAATGAACTCCAGACTCACTCGGACATGAATGTGGTAACGATACTCGTGGGCAACAAGACAGACCTGAAGGATG CGAGAGAGGTACCGACATCAGAAGGGAAGTCTTTAGCAGAGGCACAGGGCTTGTTCTTCATGGAAACTTCCGCTCTCGACTCCTCTAACGTAGCTTCGGC ATTCGAGACAGTTGTGAAGGAGATATACGACATATTAAGCAGAAAGGTGATATCTCAGGAGCTCAAGAAACAGGAAGCCCCCGAAATGGGGAACGGAAAG ACGGTGGTTTTACAGAGCGATGAGGATGGCCCTGATGCTGATGCAGCTAAACAAGCTGGCGGATGTTGCTAA
AA sequence Show only first row Show all	>Lus10038807 pacid=23150515 polypeptide=Lus10038807 locus=Lus10038807.g ID=Lus10038807.BGIv1.0 annot-version=v1.0 MAFYSQEDKADDYLFKIVLIGDSAVGKSNLLARFARDEFHPNSKSTIGVEFQTQKIDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRQ TFESIGRWLNELQTHSDMNVVTILVGNKTDLKDAREVPTSEGKSLAEAQGLFFMETSALDSSNVASAFETVVKEIYDILSRKVISQELKKQEAPEMGNGK TVVLQSDEDGPDADAAKQAGGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	0	1
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	6.5	0.7465
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	6.6	0.7810
AT5G55830			Concanavalin A-like lectin pro...		Lus10022521 [exp]	8.8	0.6884
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	10.5	0.7448
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	14.4	0.7130
					Lus10015218 [exp]	15.2	0.7386
AT5G47920			unknown protein		Lus10002566 [exp]	15.4	0.7206
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	16.9	0.7401
AT1G33920		ATPP2-A4	phloem protein 2-A4 (.1)		Lus10040603 [exp]	19.4	0.6538
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	22.7	0.7079

Compare expression of checked genes

Lus10038807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.