Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 671 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 634 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 575 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 293 / 2e-92 ATINT1 inositol transporter 1 (.1) AT4G36670 142 / 1e-36 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 138 / 5e-35 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 134 / 2e-33 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 134 / 2e-33 AtPLT4 Major facilitator superfamily protein (.1) AT2G18480 133 / 4e-33 AtPLT3 Major facilitator superfamily protein (.1) AT5G16150 129 / 1e-31 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039050 [exp] 1036 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 917 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 718 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10010500 [exp] 687 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 684 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10042820 [exp] 556 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10028118 [exp] 555 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017560 [exp] 398 / 3e-136 AT4G16480 281 / 2e-91 inositol transporter 4 (.1) Lus10025565 [exp] 297 / 4e-94 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 761 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 718 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 707 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 302 / 5e-96 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 288 / 2e-90 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 226 / 6e-70 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 193 / 6e-58 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G158700 [exp] 156 / 1e-41 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 149 / 1e-38 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 148 / 3e-38 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10038808 pacid=23150702 polypeptide=Lus10038808 locus=Lus10038808.g ID=Lus10038808.BGIv1.0 annot-version=v1.0 ATGGTGGAAGGAGGTCCTGTAAAAACAGATAAAACAGAGTTCACAGAATGTTGGAAAATCTCCTCCAAGAATCCTTACATCATGAAGTTGGCCTTCGCCG CCGGCATCGGAGGCCTCCTTTTCGGCTATGACACCGGCGTTATATCGGGGGCGTTGCTATACATAAAAGAAGATTTCCACGAAGTGGACAAGAGCACGTT CCTCCAGGAGCTCATCGTGAGCACCTGCGTGGCCGGAGCCATCATCGGAGCGGCAATCGGAGGGTACGCCAACGACAGGTTGGGGAGGAGGAAGACCATC TTGGCGGCCGATGTCCTCTTCTTCATAGGCTCCATAGTCATGGCCATCGCCCCTGTTCCAGCCGTCATCATTATTGGTAGGATCCTTGTCGGTCTAGGAG TCGGAATGGCATCCATGACCGCTCCACTCTACATATCCGAGGCATCTCCGGCCAAGATTCGAGGCGCCATGGTTAGCATGAACGGATTGCTCATCACCGG CGGGCAGTTCCTGTCCTACCTCATCAATCTTGGCTTCACCAAAGTTCCTGGAACTTGGAGGTGGATGCTTGGAGTTGCAGGACTCCCTGCAGTTATCCAG TTCTTCTTGATGTGGTCACTTCCCGAGTCCCCTAGATGGCTTTACAGAGAGAATTACGTGCACGAAGCCAAAGAGATACTCGAAAAGCTGTATCCGGAAG AAGAAGTCGAGAGGGAGATTCAAGCGCTAAGAGAATCTGTAGAGAACGAGAAGGCAATGGAGGAATCAATCGGCAAGGACATGTTCTCCAAGCTCAAAGG TGCGTTCACCGACAAGGTGGTCCGGCGGGGACTGTACGCAGGAGTGACGGTCCAAGTTGCGCAACAATTCGTGGGTATAAACACGGTCATGTACTACTCT CCGACCATAGTCCAGTTTGCAGGGTTCGCTTCGAAATCTGTGGCTCTGGCTTTGTCCCTGATTACGTCGGGGCTGAACGCTGTGGGGTCCATCATCAGCA TGATGGTGGTGGACAAGTACGGGAGGAGGAGGTTGATGTTGATCTCTATGACCGGGATCATAACTTGCCTTGTCGTTCTGGCCATTGTTTTCAACAAGGC GTCGCAGGATGCTCCGATGATCAATCCGATGGATACCAAGCATTTCGGGTTGAATGTAACGTGTCCAGGTTACTTGCAGAATTTGCATAAGCCTAAGTGG GGGTGTATGCAGTGCTTGAAGGCTGATTGCTCCTTCTGTTCCAACCCAATCAAACAGGACGCACCAGGAGCATGCCTGATACCTGACAGGTCGATAAGGG AAGTCTGCAAATCGGAGCGACGTATCTTATACGAGGAAGGATGTCCGAGCAAGATCGGATTTTTGGCCGTTATCCTATTGGGTCTCTACATCATCTCCTA CTCTCCAGGAATGGGAACCGCGCCATGGATCGTCAACTCAGAGATATACCCGCTTCGCTACAGAGGAGTAGGCGGAGGAATAGGCGGTGGAATCGCTGCC GTAGCCAATTGGACGTCGAATTTGATCGTCAGCTTGACTTTCCTGACGATGACGCAGACGCTGACCGTTGCCGGAGCTTTCCTGATGTTCGCGGCGATCT CGTTCGTGATGGCGGTGGCTATTTTCTTCCTGGTGCCGGAGACCAAAGGTCTGCAATTTGAGGAAGTGGAGAAGCTTCTCAGAGATGGGTTCAAGCCTGA TTTGTTTAAGAAAAGATCAAGAGATGATCAAGGCAAAGGCAAATCGCCTGCTTGA
AA sequence Show only first row Show all	>Lus10038808 pacid=23150702 polypeptide=Lus10038808 locus=Lus10038808.g ID=Lus10038808.BGIv1.0 annot-version=v1.0 MVEGGPVKTDKTEFTECWKISSKNPYIMKLAFAAGIGGLLFGYDTGVISGALLYIKEDFHEVDKSTFLQELIVSTCVAGAIIGAAIGGYANDRLGRRKTI LAADVLFFIGSIVMAIAPVPAVIIIGRILVGLGVGMASMTAPLYISEASPAKIRGAMVSMNGLLITGGQFLSYLINLGFTKVPGTWRWMLGVAGLPAVIQ FFLMWSLPESPRWLYRENYVHEAKEILEKLYPEEEVEREIQALRESVENEKAMEESIGKDMFSKLKGAFTDKVVRRGLYAGVTVQVAQQFVGINTVMYYS PTIVQFAGFASKSVALALSLITSGLNAVGSIISMMVVDKYGRRRLMLISMTGIITCLVVLAIVFNKASQDAPMINPMDTKHFGLNVTCPGYLQNLHKPKW GCMQCLKADCSFCSNPIKQDAPGACLIPDRSIREVCKSERRILYEEGCPSKIGFLAVILLGLYIISYSPGMGTAPWIVNSEIYPLRYRGVGGGIGGGIAA VANWTSNLIVSLTFLTMTQTLTVAGAFLMFAAISFVMAVAIFFLVPETKGLQFEEVEKLLRDGFKPDLFKKRSRDDQGKGKSPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	0	1
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	4.0	0.7349
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	4.1	0.8221
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	6.3	0.7534
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	7.9	0.7324
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	7.9	0.7615
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	12.8	0.7580
					Lus10033476 [exp]	14.8	0.7703
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	17.7	0.7464
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	19.6	0.7226
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	20.5	0.7378

Compare expression of checked genes

Lus10038808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.