Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 605 / 0 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 395 / 6e-132 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 378 / 2e-124 PRORP3 proteinaceous RNase P 3 (.1) AT5G60430 70 / 5e-14 drug transmembrane transporters;antiporters (.1.2) AT1G08610 61 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 58 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 57 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 57 / 4e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 56 / 8e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G21222 56 / 8e-08 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039049 [exp] 1066 / 0 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 703 / 0 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 649 / 0 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 422 / 2e-138 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 360 / 1e-117 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10043379 [exp] 233 / 7e-72 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10000909 [exp] 63 / 4e-10 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001284 [exp] 57 / 4e-08 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012180 [exp] 57 / 5e-08 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074100 [exp] 684 / 0 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.017G144900 [exp] 681 / 0 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 413 / 2e-134 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 397 / 3e-132 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 389 / 7e-129 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.001G139300 [exp] 57 / 3e-08 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 56 / 8e-08 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.008G185000 [exp] 54 / 2e-07 AT1G13040 627 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 53 / 4e-07 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G043500 [exp] 53 / 5e-07 AT1G80880 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0280 [flax] [poplar] PIN PF11977 [flax] [poplar] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Lus10038809 pacid=23150337 polypeptide=Lus10038809 locus=Lus10038809.g ID=Lus10038809.BGIv1.0 annot-version=v1.0 ATGTCGTTTCTCCAGCATAGCTACCATCACCACACTTTATTACATCCTCCGCTGCTACCTTATTTTAATGGCTGCTTATTTGCCAAACCTGTGAAAGTTA CCGGATTTCACCGCTTTGGAAGAGCCAATTTGTGTAGCCTGATAGCCGCTGCATTGCCCCGTACTCACGAGTCATCGTCATCTTCATCAGTGACTCGAGT TTTCGGGAGAGAAAAAACAAAAGCACTGAGGAAAGCTGCCAGGAATTCACCTGAGGGGCAACTCAGGCAGAAGCTTGACATGTGCTCGAAATCTAGCAAC CTAGACGAAGCACTTCGCCTGTATGATCAGGCGCGGAGCAGTGGAGTTCCTCTTAACCAGCATAGTTACAATGTTTTGCTGTATTTGTGCTCTTCTCCTC GTTCTTTGGACGAGCCAGCTGAAGAAGGAAGTAAGGTGAGCTACTCTGATTTGGGTTTGAGAAGGGGGTTTGAGATATTTCAGCAGATGGTACTTGATAA AATCGACCCGAATGAGGCAACTTTTACGAATGCGGCAAGGCTTGCTGCCGGTTTGGAAGATCCGGATATGGCGTTTGAGTTGGTTAAGCAAATGAAGACT TTCGATATCCCTCCGAAATTGAGGTCATACGGTCCCGCATTATTTGGCTACTGTAGTAAAGGGATGGCTGATAGAGCTTATGAAGTCTATCTAGACATGA TTGATTCCGGAGTAATGCCTGAAGAACCCGAGGTTTCTGCTCTTTTGAAAGTGAGTGCTGATGCCGAGAAGGGAGAGTGGGTGTATGAGATGATGCATCG GTTACGAACCACAGTTAGACAGGTTACTGAATCTACAATGAATGTAGTTGAGGATTGGTTTAACTCCGAGGTTGCTGGAAAAGTTGGTGAAGTGAATTGG GATGTGAGGAAGATAAAGGAAGGAATCGTCAAGGGTGGAGGAGGATGGCACGGGCAAGGCTGGTTAGGGAGCGGACCGTGGAGAGTAGTAAGGACTCGAC TCAACGAGCAAGGTGTTTGTTGTGCTTGTGCCGAGAAGCTTGTTTGCATCGATATTGATCCGAGAGAGACGGAGCATTTTGCTAGTTCGTTGAGTAACTT GGCTTGCAAGAAAGAAGTCAGAGCAGATTTCATTCGGTTCCAGGAGTGGCTCCGGCGGAATGGTCCATTCGATGCGGTTGTAGATGGTGCAAACATAAGT TTGATCAACCAGCTGCAATTCAACTTTCACCAGCTTAACATTGTTGTGAACAAACTGCGGCAAATGAGCCCATCAAAGAGATATCCTCTTATTATTTTGC ATAAGAACCGCGTAACTGGAGGTCCTGCCCGAAGTCCAAACAACCTAAGGCTGTTAGAGAGATGGGCAAAGGCTGGAGCGCTTTATGCCACTCCCCTGGG TTCAAATGATGATTGGTACTGGTTATATGCTGCTGTGAGTTTTAAGAGTTTGTTGGTGACGAATGATGAGATGAGAGACCACTTGTTCCAGTTACTCGGA ACGTCATTCTTTCCGAGATGGAAGGAGAAGCATCAGGTTCGGATGTCAGTAACAACTTCAGGAGTCAAATTACACATGCCTCCTCCGTATTCAATTGTCA CTCAGGTTTTGATGCACAGCCGACCTGAGTCCGAAAAGGGTAGTTGGCACGTCCCGATGAAAACGGATGATGGTCTTGACACCCCGAGGCAATGGCTATG TGCAACTAGACAAAGGGCATAG
AA sequence Show only first row Show all	>Lus10038809 pacid=23150337 polypeptide=Lus10038809 locus=Lus10038809.g ID=Lus10038809.BGIv1.0 annot-version=v1.0 MSFLQHSYHHHTLLHPPLLPYFNGCLFAKPVKVTGFHRFGRANLCSLIAAALPRTHESSSSSSVTRVFGREKTKALRKAARNSPEGQLRQKLDMCSKSSN LDEALRLYDQARSSGVPLNQHSYNVLLYLCSSPRSLDEPAEEGSKVSYSDLGLRRGFEIFQQMVLDKIDPNEATFTNAARLAAGLEDPDMAFELVKQMKT FDIPPKLRSYGPALFGYCSKGMADRAYEVYLDMIDSGVMPEEPEVSALLKVSADAEKGEWVYEMMHRLRTTVRQVTESTMNVVEDWFNSEVAGKVGEVNW DVRKIKEGIVKGGGGWHGQGWLGSGPWRVVRTRLNEQGVCCACAEKLVCIDIDPRETEHFASSLSNLACKKEVRADFIRFQEWLRRNGPFDAVVDGANIS LINQLQFNFHQLNIVVNKLRQMSPSKRYPLIILHKNRVTGGPARSPNNLRLLERWAKAGALYATPLGSNDDWYWLYAAVSFKSLLVTNDEMRDHLFQLLG TSFFPRWKEKHQVRMSVTTSGVKLHMPPPYSIVTQVLMHSRPESEKGSWHVPMKTDDGLDTPRQWLCATRQRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	2.0	0.9390
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	2.8	0.9298
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	5.0	0.9263
					Lus10005791 [exp]	6.9	0.9287
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	7.1	0.9290
					Lus10040882 [exp]	7.5	0.9253
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	7.7	0.9201
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	8.4	0.9175
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	8.7	0.9055
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	10.0	0.9122

Compare expression of checked genes

Lus10038809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.