Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12360 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039048 [exp] 340 / 1e-119 AT5G12360 42 / 1e-04 unknown protein Lus10003273 [exp] 198 / 2e-63 ND 42 / 8e-05 Lus10006544 [exp] 195 / 2e-57 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101600 [exp] 80 / 4e-18 ND / Potri.017G113501 [exp] 79 / 8e-18 ND / Potri.009G072000 [exp] 43 / 4e-05 AT3G14190 105 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038810 pacid=23150562 polypeptide=Lus10038810 locus=Lus10038810.g ID=Lus10038810.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAAGTGGGCCGTTTGTTCCAGGAAAGTAATGTTGTTCGAGAAAACGTCTGGGTGAAGCCCGATGCCTCAAAATCGTCTAAGAAGGGATTAG GGTTAGGTGGAAGGAAACCGTTGGGTGATTTGTCGAACGCGGCAAAGAATCATTCTTTTTCTGCTTCTCTGAACCAAACCTCCAAGAAGACTCCAGTTGG TGTGGGGGTCAAAGCTACTGGAAAGCTGCGGACTAGCCCCAAGAATAGGAAGGTACTTTCTGACATCTCGAATTCAGCTAAGTTACAGAAGCGAAATAAG GCGTCTAAGGAGACCGTGGTTAAGGGAAAGCTGAGTGTTGTGCCTGAGGAGGAGCCATCGGTTGTTGCGTGTGGGATTGAGGAAGAAGGGTTTCTGCACG ATCATGAGAAATGTATCAAAACACAGACCCGAGCAATGGATGTCAGTGAGTTCATGAAGATCATCGCGATGGAGGATGATTTTCCGATTCAGTTTGGATC CCCACCGGCAAGTGCTAGGACTAACCGGTTTGAGCCCGACAGTCCAGTGAACTACAAGCTGCGGATCGAAGAGGGAAGCTGGGATTTCGAACATTCTTCT CCTGCTGGAAAGCATGATTCTTCCCCTTGTTGGAGTCCACCATCATCCCCGGAGTCCGATTTAAGCTGGATGGATCGTGAAGATGACATCTTCAACCTCA AGTTGATAGATTCTCCTTAA
AA sequence Show only first row Show all	>Lus10038810 pacid=23150562 polypeptide=Lus10038810 locus=Lus10038810.g ID=Lus10038810.BGIv1.0 annot-version=v1.0 MASKVGRLFQESNVVRENVWVKPDASKSSKKGLGLGGRKPLGDLSNAAKNHSFSASLNQTSKKTPVGVGVKATGKLRTSPKNRKVLSDISNSAKLQKRNK ASKETVVKGKLSVVPEEEPSVVACGIEEEGFLHDHEKCIKTQTRAMDVSEFMKIIAMEDDFPIQFGSPPASARTNRFEPDSPVNYKLRIEEGSWDFEHSS PAGKHDSSPCWSPPSSPESDLSWMDREDDIFNLKLIDSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12360			unknown protein		Lus10038810 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	1.4	0.9694
AT5G15510			TPX2 (targeting protein for Xk...		Lus10029190 [exp]	2.2	0.9695
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	2.4	0.9687
AT5G12360			unknown protein		Lus10039048 [exp]	2.8	0.9661
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	3.2	0.9640
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	3.5	0.9615
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	6.9	0.9524
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	7.9	0.9523
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	8.3	0.9356
AT4G13690			unknown protein		Lus10000756 [exp]	8.8	0.9457

Compare expression of checked genes

Lus10038810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.