Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53450 767 / 0 ORG1 OBP3-responsive gene 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014920 [exp] 1005 / 0 AT5G53450 567 / 0.0 OBP3-responsive gene 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017100 [exp] 882 / 0 AT5G53450 890 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016801 [exp] 759 / 0 AT5G53450 758 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016500 [exp] 277 / 4e-88 AT5G53450 288 / 2e-93 OBP3-responsive gene 1 (.1.2) Potri.015G016600 [exp] 238 / 4e-75 AT5G53450 224 / 5e-71 OBP3-responsive gene 1 (.1.2) Potri.015G016300 [exp] 172 / 6e-51 AT5G53450 180 / 5e-55 OBP3-responsive gene 1 (.1.2) Potri.015G016375 [exp] 156 / 1e-44 AT5G53450 168 / 6e-50 OBP3-responsive gene 1 (.1.2) Potri.008G116800 [exp] 52 / 8e-07 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038813 pacid=23150689 polypeptide=Lus10038813 locus=Lus10038813.g ID=Lus10038813.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCCGATCACCTTCTCTCACCGGACGGCGATTCGAACCCTCAACGAACTCCTCACCGCCGAATACGACGGCGAGATTGTTCGGCAGGCACA GGCAATTACGCTATGGAAACAGGTCGATCGGCGTCGGAGAGAGGAGAATATGTAACGTGAGGTGCTTCTCTTCTTCTTCTTCTTCTTCAGCTACTTCGAG TGGAGCTGTTTCGCCGATGGTGGAAGAGGAAGAAGAAGATGAGTCAGGGGATGTGATTAGATTTGAGATGTCCGATTTCAAGATGCTCGATCACGTTAGC GTCGGCCTGGGAGGGCGGGCGGACGAGGTAGTATCCGAAGCTGTGGTTAACGATGCATCGAGTCCTTTGTATAATACGAGAGTTGTTCTAAGAAGGCTAA CGAGTGTTCAAGCTCAACGAAGGGGAAAGCGAGCAATCGAGGTGTTGAAGAAGCTGGTTCGTCGGAGGCTAATGTACCATTCATATTCAATGCAAGTTCA TGGATACATTTCCCACGCAAGTTCTGGTTGTGCCTCCTTCACATTGGTCCATGGGTACCATGGTAGCTTTTCCTTGAGACATTGGCTGAAGCAGTCGGAT TGGCTGCCTACTTTGGAAGCTACACTGGCGTTGGACGAGGAGTCGGTCAGGAAGGTTGGAGATGACACGGTTGGAGGGCCGACAGTTTCGAGGCAATTAC GAATTATTCGAATCTTGATGAGAGACCTTTTGATTGGAGTTAACTACTTGCACAGCCATGGACTTGCTCATACAGAGCTGAGGCTTGAGAATGTGCATAT AAGCCCCGTGGATAGACATATCAAAGTGGGGATACTAGGTAATGCTGCTGATTTTTACGAGGATGGTCAGACCGCTACTACATTGGACACCAACCTGGAT CGGCGACAAATGATGATTGCATTTGACATGAGATGCTTAGGATTCATGATGGCCAAGATGGTGCTTCGAGAACTCATGGATCCACCGGTGTTTTCAAAGT TCAAAGCCTTCTTGATGAAGGGACACGATCCGTCCTGCCTCCGTGAGTTCTTGCTTCAGACTCTTAACAGGAGTTCTTCGTCTGGAAACATTGGTCTCCA AATACTCGACCGAAGTTGGGGTGCAGGATGGAACCTTCTGTCCTTGTTACTCGCAACGAAATCCTCTAAACGAATAAGTTGTCTGGATGCTCTGAGGCAT CCATTTCTGTGTGGACCGAGATGGCGCATTGCTCCATCCATGGATATCATTCGATGGGGTCTCAGCTCAACAGCAGTACGAATCGTTGAGGAATACATTT ACAGTAGGCCACAGCGAAATAAGATTTCGTACTTCATCGAATTGATGGAGATGCTCAACCCAAATTCAAAGCTAAAGAACTGGTTCGAATTACTGCCAGG GAAATGGCGTCTCGTGTACTGCACAGGAAGACATCTCGGTCTAACCCTCCGCCAGCCACCCGCCCAGGTACTCATTGGAGACGTTCACCTAACTGTATCA AAGAAAAGCAAAGACCTTTCATTCAGCTCCACAATTCCCTTCAAGGTCATGAGCGGCCGCGACTGGCCCCACGACAAGACCGGCATCAATGGCCAGCTAA ACGTGGACTCCCCATTCAGACTAACACCAGGGAAGAGACTCTATCTCAAGGGAGAGAAGACTACCGGGAGATTCTCCTACAGCGAATCCACCGACGTGGG TTCCTTTGCACCCAAGCTTTTCGAGGGGAAGTGGAAGGACGCTATCCCTTTCAAGGAGTTCCCCTCGAGCCTTCGTGTCGCGAAGCTTGTAGCTTCCACG GACGCTCTAGAGATCGCGATGAGCTTAGCCGATCAGAATGCGGCTCAGGCTCGAAACGTGCTCCAAGAGGTCCGCACCCAGTTACCTCCCGAGATGTTCG ATTTGTCCAAGATTGTTTGCGGGACTTTCATCGACTCGCGGCATTTGGTTCTTCGTGGTGTCAATGGGTCTGCTATGTTGTTTGCTAGGTCTTGTTTGGA TCAGTAG
AA sequence Show only first row Show all	>Lus10038813 pacid=23150689 polypeptide=Lus10038813 locus=Lus10038813.g ID=Lus10038813.BGIv1.0 annot-version=v1.0 MAALRSPSLTGRRFEPSTNSSPPNTTARLFGRHRQLRYGNRSIGVGERRICNVRCFSSSSSSSATSSGAVSPMVEEEEEDESGDVIRFEMSDFKMLDHVS VGLGGRADEVVSEAVVNDASSPLYNTRVVLRRLTSVQAQRRGKRAIEVLKKLVRRRLMYHSYSMQVHGYISHASSGCASFTLVHGYHGSFSLRHWLKQSD WLPTLEATLALDEESVRKVGDDTVGGPTVSRQLRIIRILMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGQTATTLDTNLD RRQMMIAFDMRCLGFMMAKMVLRELMDPPVFSKFKAFLMKGHDPSCLREFLLQTLNRSSSSGNIGLQILDRSWGAGWNLLSLLLATKSSKRISCLDALRH PFLCGPRWRIAPSMDIIRWGLSSTAVRIVEEYIYSRPQRNKISYFIELMEMLNPNSKLKNWFELLPGKWRLVYCTGRHLGLTLRQPPAQVLIGDVHLTVS KKSKDLSFSSTIPFKVMSGRDWPHDKTGINGQLNVDSPFRLTPGKRLYLKGEKTTGRFSYSESTDVGSFAPKLFEGKWKDAIPFKEFPSSLRVAKLVAST DALEIAMSLADQNAAQARNVLQEVRTQLPPEMFDLSKIVCGTFIDSRHLVLRGVNGSAMLFARSCLDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10038813 [exp]	0	1
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	1.0	0.9779
AT3G56360			unknown protein		Lus10034235 [exp]	9.9	0.8902
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036310 [exp]	10.2	0.9368
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	11.6	0.9412
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	15.0	0.9311
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	17.3	0.8972
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	18.1	0.9344
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	26.2	0.9270
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	33.4	0.9292
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	34.8	0.9024

Compare expression of checked genes

Lus10038813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.