Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38250 141 / 3e-38 Protein kinase family protein (.1) AT5G38240 139 / 1e-37 Protein kinase family protein (.1) AT5G38280 140 / 2e-37 PR5K PR5-like receptor kinase (.1) AT5G39030 139 / 6e-37 Protein kinase superfamily protein (.1) AT1G70250 137 / 2e-36 receptor serine/threonine kinase, putative (.1) AT5G38260 135 / 6e-36 Protein kinase superfamily protein (.1) AT4G18250 131 / 3e-34 receptor serine/threonine kinase, putative (.1) AT1G66980 130 / 7e-34 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 129 / 2e-33 Protein kinase superfamily protein (.1) AT1G66910 127 / 4e-33 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014924 [exp] 313 / 7e-103 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10014921 [exp] 163 / 3e-51 AT5G24165 80 / 2e-21 unknown protein Lus10025544 [exp] 159 / 2e-45 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 159 / 4e-44 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 152 / 4e-44 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025549 [exp] 150 / 4e-44 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 156 / 2e-43 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027085 [exp] 149 / 4e-43 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10022359 [exp] 154 / 1e-42 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018600 [exp] 181 / 2e-52 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.017G034500 [exp] 172 / 7e-52 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 173 / 2e-49 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 172 / 4e-49 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 172 / 5e-49 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 171 / 2e-48 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 170 / 4e-48 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.007G125800 [exp] 167 / 2e-47 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 167 / 2e-47 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.017G009500 [exp] 165 / 2e-46 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038814 pacid=23150573 polypeptide=Lus10038814 locus=Lus10038814.g ID=Lus10038814.BGIv1.0 annot-version=v1.0 ATGGGAGGAGAAGGGCAGCTTCTGAAGAGAATCCCGCGAATCAAGTTCCCAAAAAGACACTCATCCTCCTCCGGTTCACAGGGTCAGGAGACGGCAACAG CTACAACAGGCAAAGGGAAAATTCAGTTCTCCATGGCATCTGGATCAGATGTCCCGCCATCGATCTCCGACACTACTGCTGGAGGGAAGGCTTCTCTTCA GCCTAAACGTACTCCCGTCACAGATAGAGAGATTGAAGCTGTAATGTTCTCATTCAAGAGCACGAACTTCACCCCCAAGATCTCCGATTTCGGTCTCGCC AAGCTCCACCCCGCAGCAAGCAACAACACCATCTCCCTCACCGCAGCTCGAGGCACCATCGGGTACATCGCCCCGGAACTCTTCTACAAGAACATAGGAC GCGTCTCCTACAAGGCCGACGTGTACAGCTTCGGAATGCTGGTCTTGGAGATGGCAGGGAAACGTAAAGGATCGAACCCCGAACCAGCGGCACCGACCGG TTCGAGTTACTTCCCTCACTGGGTTTACAACCAAGTAGCGGGTACTGAACAGGTGATGATAAAAACGGAAGAAGAGAGGATTGCGAAGAAGATGGTGATC CTCGCGTTGTGGTGCATACAGATGAAGCCCGAGAATCGGCCATCCATGAGTAAAGTCGTGGAGATGCTTGAAGGTGAATTGGAGAGCTTGCCATTGCCTC CTAGGCCTGGTTCGTACCCAGACGTCTCTCCATTGGAGCAAGAGTGTTCCTCTTCTTATGGTACTAGTACATTGTACTCTTCTTCCAATGGTACCATTTA CTCTGGTTCCCCTGAAGCTGCAAGTCTGGTTGTGTATTCTGGATAA
AA sequence Show only first row Show all	>Lus10038814 pacid=23150573 polypeptide=Lus10038814 locus=Lus10038814.g ID=Lus10038814.BGIv1.0 annot-version=v1.0 MGGEGQLLKRIPRIKFPKRHSSSSGSQGQETATATTGKGKIQFSMASGSDVPPSISDTTAGGKASLQPKRTPVTDREIEAVMFSFKSTNFTPKISDFGLA KLHPAASNNTISLTAARGTIGYIAPELFYKNIGRVSYKADVYSFGMLVLEMAGKRKGSNPEPAAPTGSSYFPHWVYNQVAGTEQVMIKTEEERIAKKMVI LALWCIQMKPENRPSMSKVVEMLEGELESLPLPPRPGSYPDVSPLEQECSSSYGTSTLYSSSNGTIYSGSPEAASLVVYSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38250			Protein kinase family protein ...		Lus10038814 [exp]	0	1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	6.6	0.8115
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	7.6	0.8076
					Lus10001956 [exp]	9.8	0.7931
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	10.2	0.7850
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	11.0	0.7781
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	13.8	0.7831
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	14.5	0.7940
AT2G25720			unknown protein		Lus10042976 [exp]	15.5	0.7475
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	17.6	0.7872
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	18.8	0.7867

Compare expression of checked genes

Lus10038814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.