Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 955 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 796 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 792 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G46430 762 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT4G30560 716 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 713 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 712 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 678 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 677 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 640 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014925 [exp] 1219 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10019014 [exp] 1089 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 1062 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 699 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 697 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 689 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 687 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 665 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 645 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002200 [exp] 975 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 972 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 822 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 813 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 722 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 680 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 677 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 659 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 648 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 607 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038815 pacid=23150471 polypeptide=Lus10038815 locus=Lus10038815.g ID=Lus10038815.BGIv1.0 annot-version=v1.0 ATGATCCTCCAACCCCACAAAGCCTCCCAGCCTTCATTCAAACTCACCCTTTTCTTCCTCCTCCATTCTTCTTCTGCAACACCAAACTCTGCAATTTTTC CCTCAGTTGAAGAAGAAGAACAACAACAAGAAGAAGAACAAGTTCAGGTGTTGCTGTTCTTCTCATGGCTGTGGACTCAACTGCAGTTTCATGAATGGAG ATCAGAGAAAAGTTCAGAATCAGACTACCAACAACCAGGAAAAGTCAGAACCAAGATAAGCTCATTGTCTGATAAGTTCAAGAGGAGACTAGGATCCGGT TCAGAGAGGTTCAGTAAGATCAAAAGATCCTTGAAATCATACTCCTTCAACGACAAAGGCTCAAAAAATGGCGGCTCTAGCTCTCGAATCCTCGATCCGC AGGGAGCCTTCCTGCAGAAATGGAACAAGATATTTGTCCTGTCTTGCTTCCTTGCTGTGTCCTTGGACCCTTTGTTCTTCTACGTCCCTCTCATCGATCC GGAGAACAGCTGCCTTAAGCTCGACAACAAGATGCAGATCACGGCCAGCGTGCTCCGATCCTTCACCGACGTGTTCTACATTCTCCACATTGTGTTTCAG TTTCGTACCGGATTCATTGCTCCTTCTTCCCGTGTCTTCGGGAGAGGGGTTCTGGTTCAGGACGGATTGGCGATTGCGAAGAGGTACGTGGCTTCATACT TCTTGATCGACGTGCTCGCATTGCTACCTCTCCCACAGATGGTGATTCTAATCATTACTCCGAGGCTTCAAGGCTCGAGAACACTGAACACAAAGAACTT GTTGAAGTTCGTCGTGATAATCCAGTATCTACCGAGGATCATTAGAATTTATCCATTGTATAGCGAAGTTACCAGGACTTCTGGTATACTTACAGAAACT GCTTGGGCTGGAGCTGCATTCAATCTGTTTCTGTACATGCTTGCTAGTCACGTGCTTGGAGCATTTTGGTACTTGTTTTCGGTAGAGAGGCTCACAGAGT GTTGGAAGAAAGCCTGCGACGCTATTTCGTGCGATCGCGATATGCTCTACTGTGATGGTCCCAGAGGTTTTAGTAAGGCGTTCTTGAACACCTCGTGTCC TGTAAATCCGGAGAATGCAGATGTGTTCAATTTCGGGATATTCCTCGATGGGCTCCAGTCTGGCGTTGTGGCGACTCATGACTTTCCAAAGAAGTTATTC TACTGTTTCTGGTGGGGACTTCGCAATCTCAGTTCACTCGGTCAGAACCTTGCAACGAGCACATTTGTGTGGGAGATCTGCTTCTCGGTTGCTATCTCGA TCTTCGGATTAGTGCTGTTTGCGTTCCTCATTGGGAATATGCAGACTTTCTTGCAATCCACGACAACTAGATTGGAGGAAATGAGAGTGAAAAGGCGAGA CGCGGAGCAATGGATGTCCCACCGAATGCTTCCGGATAATTTAAAGCAGCGAATCCGGCGGCACGAGCAGTACAAGTGGCAAGAAACTCGAGGAGTCGAA GAGCAGAATCTCGTCCACAATCTTCCCAAAGACATTCGAAGAGACATCAAACGTCACCTCTGTTTGGCACTTCTAATGAGAGTGCCAATGTTCGAAAAGA TGGATGATCAACTGTTGGATGCAATGTGCGACCGTTTGAGGCCGGCGCTGTACACAGAGGAAAGCTACATCGTCCGCGAAGGGGACCCAGTCGACGAGAT GTTGTTCATCATGAGGGGAAAGCTACTAACCATCACGACAAATGGCGGAAGGACGGGCTTCTTCAACTCAGAGAAGCTCAAGGCAGGGGATTTCTGCGGC GAGGAGCTTCTCACGTGGGCGCTAGACCCTCACACGTCGTCGAACCTCCCCATTTCGACCAGGACTGTGAGGACCATCACGGAAGTGGAAGGATTCGTGC TGACCGCCGAGGACTTGAAGTTCGTGGCGTCCCAGTTCCGCCGGCTCAACAGCAAGCAGATCCGCCACACTTTCCGGTTCTACTCGCAGCAGTGGAGGAC GTGGGCGGTATATGTGTGA
AA sequence Show only first row Show all	>Lus10038815 pacid=23150471 polypeptide=Lus10038815 locus=Lus10038815.g ID=Lus10038815.BGIv1.0 annot-version=v1.0 MILQPHKASQPSFKLTLFFLLHSSSATPNSAIFPSVEEEEQQQEEEQVQVLLFFSWLWTQLQFHEWRSEKSSESDYQQPGKVRTKISSLSDKFKRRLGSG SERFSKIKRSLKSYSFNDKGSKNGGSSSRILDPQGAFLQKWNKIFVLSCFLAVSLDPLFFYVPLIDPENSCLKLDNKMQITASVLRSFTDVFYILHIVFQ FRTGFIAPSSRVFGRGVLVQDGLAIAKRYVASYFLIDVLALLPLPQMVILIITPRLQGSRTLNTKNLLKFVVIIQYLPRIIRIYPLYSEVTRTSGILTET AWAGAAFNLFLYMLASHVLGAFWYLFSVERLTECWKKACDAISCDRDMLYCDGPRGFSKAFLNTSCPVNPENADVFNFGIFLDGLQSGVVATHDFPKKLF YCFWWGLRNLSSLGQNLATSTFVWEICFSVAISIFGLVLFAFLIGNMQTFLQSTTTRLEEMRVKRRDAEQWMSHRMLPDNLKQRIRRHEQYKWQETRGVE EQNLVHNLPKDIRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLRPALYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEKLKAGDFCG EELLTWALDPHTSSNLPISTRTVRTITEVEGFVLTAEDLKFVASQFRRLNSKQIRHTFRFYSQQWRTWAVYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	1.0	0.9317
AT2G18210			unknown protein		Lus10025998 [exp]	3.5	0.8510
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	3.7	0.8322
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	6.6	0.8659
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10026346 [exp]	7.5	0.8494
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	7.7	0.8328
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	9.6	0.8704
AT3G52105			unknown protein		Lus10019704 [exp]	10.0	0.8432
AT4G36500			unknown protein		Lus10025997 [exp]	11.4	0.8041
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	13.0	0.8765

Compare expression of checked genes

Lus10038815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.