Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 508 / 7e-172 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 387 / 3e-126 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 255 / 3e-76 Domain of unknown function (DUF3444) (.1) AT2G05230 223 / 2e-63 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 223 / 2e-63 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 199 / 1e-56 unknown protein AT5G37380 182 / 8e-51 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 179 / 9e-49 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 170 / 5e-48 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 168 / 6e-48 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014927 [exp] 1171 / 0 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 510 / 2e-173 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 490 / 3e-165 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 279 / 8e-82 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 273 / 8e-80 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 251 / 3e-73 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 250 / 6e-73 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10027316 [exp] 239 / 8e-71 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 212 / 1e-61 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001100 [exp] 662 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 635 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 536 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 343 / 7e-108 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 329 / 2e-102 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 317 / 1e-97 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 261 / 2e-77 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 256 / 1e-75 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 182 / 6e-48 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 181 / 8e-48 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10038816 pacid=23150265 polypeptide=Lus10038816 locus=Lus10038816.g ID=Lus10038816.BGIv1.0 annot-version=v1.0 ATGGAATGCAATAAAGACGAAGCACTCAGAGCGAAAGAAATAGCGGAGAGAAAGCTTAACGAGAAGGACTATGTCGGTGCCAAGAAGTTTGTCCTCAAGG CTCAGAACTTGTACCCCGGTCTAGATGGCCTACCGCAAATGTTGACTACGCTAGAGATCTATCTTTCTGCTCAGAACGTAATAAGCAATGGCGAAGTTGA TTGGTATAATGTTCTCGGTGTTAGTCCCTGGGCGGACGAGGATACCGTGAGGAAACAGTACCGTAAGCTAGCTCTTGCCCTTCACCCGGACAAGAATAAG TCAATGGGCGCCGATGGGGCGTTCAAGCTGGTTTCCGAAGCATGGAGGTTGCTATCTGATAAAGACAGCAGAGTAGCATACAACAGGAAGCTAAACCATA GAGATAAATCCTCGTCGACGAAGCAACCTAGTGCAAATGCTAATGGCTTCCATACTTCGAGCCGTTCTGTTAATCCTCCTTCTGCAAAGACAAAGAATCC TCCGAATAAGAAGCAGAATACGTTTTCAGGAACCGAAGCGAACAAGCCGGACACTTTCTGGACGATTTGCGACAAATGCAAGACGCAATTTGAGTACCTT AGGGTTTATCATAATCACACCCTTTTGTGCCCTAACTGTCACCAGGCATTTCATGCTGTAGAGAGAGCTCCACCTCCCAATGTCGTGCCTGATCAATCTC GATATCATCAAAAAAAGCATCAACAGAAATCGAAGCCAAAGCAGCCTCCTCCTGCTGCTGCTGCAAGAAACAATAATGCCGGAATGAACCAGAGTTCCGG AGGGAGTAGTCGTGTAGTAAATGGTGCTGGAGGGATGAATAATGCTTCAACATCTACTGGAGCTCCTAGTGTTCAGGACTGGATTAGGAACCATTTGCCG AAGAAGAGGGAGGGTGACGTTATGCCTCCTGAAGACGATCAGTTGTTTAAAAGGAAGAGAGCAAATGAAACTAAAATGGAAGAAACGTCCGATCCAGCTA ATGTGTTTGAGTTTCGTGTCGAAACCGGAAAGGTGTACAGAGATTTAACTTCTATCGAGATTCGGAACATTTTGGTCGGGAAAGCACGGTTGGCGATCAG CAAGAAGCTCGATGAATGGAGCTTGAGAGAAGCAAAAGTAAGCAGCAACAGTGGGAAGAAGAAAACCACAGGCGAATCTAAGATCCCGTTGAATCCGGAA CAAGGCAAGGGTTCTGTGCCTCAACTAATGTCCATCAATGTACCGGATCCAGACTTCCACAACTTCGATTCGGATCGGACCGAGAGTTCGTTCAGGGACG ACCAAGTGTGGGCAGCTTACGATGAGAACGACGGGATGCCACGTTACTACGCAAAAATCCACAAGGTGGTATCTTTGCATCCCTTTAAGATGAAGATCAG CTGGCTCAACTCGAGAACGAGCACCGAGTTTGGCACCACTCTGGACTGGGTGGGCTCTGGATTCCTGAAAACCTGTGGCGATTTCAGGATCGGCAGATAC GAGATGGGCGAGACATTGAATGCATTCTCCCACGAGGTGAAATGGACGAAAGTGCCCCGCGGGCTCATCCGAATACTCCCTTCCAAAGGAGACGTGTGGG CTCTGTACCGGAACTGGTCTCCTGAGTGGAATCGGAACACCCCGGCCGAAGTGGTACGCAGGTACGACATGGTGGAAGTGCTCGAAGATTACGACGAAGA ACGAGGCACGCCGGTAGTTCCTTTAGTGAAACTCAAAGGTTTCAAAACTGTCTTCCTCAAACCATCAATTGACGACGACGGCGATGACTCCAATGTAGTA AGGAGGATCCCAAGGGAAGAGATGTTTCGATTCTCGCACCAGGTACCGCATCATCTCCTCACGGGGGATGAAGCTGCGAACGCGCCGAAGGGATGCCTCG ATCTAGACCCTGCCGCGGCACCATTGGGGCTTCTACAAGATGAGATGCAGCAGGAGGGTTAA
AA sequence Show only first row Show all	>Lus10038816 pacid=23150265 polypeptide=Lus10038816 locus=Lus10038816.g ID=Lus10038816.BGIv1.0 annot-version=v1.0 MECNKDEALRAKEIAERKLNEKDYVGAKKFVLKAQNLYPGLDGLPQMLTTLEIYLSAQNVISNGEVDWYNVLGVSPWADEDTVRKQYRKLALALHPDKNK SMGADGAFKLVSEAWRLLSDKDSRVAYNRKLNHRDKSSSTKQPSANANGFHTSSRSVNPPSAKTKNPPNKKQNTFSGTEANKPDTFWTICDKCKTQFEYL RVYHNHTLLCPNCHQAFHAVERAPPPNVVPDQSRYHQKKHQQKSKPKQPPPAAAARNNNAGMNQSSGGSSRVVNGAGGMNNASTSTGAPSVQDWIRNHLP KKREGDVMPPEDDQLFKRKRANETKMEETSDPANVFEFRVETGKVYRDLTSIEIRNILVGKARLAISKKLDEWSLREAKVSSNSGKKKTTGESKIPLNPE QGKGSVPQLMSINVPDPDFHNFDSDRTESSFRDDQVWAAYDENDGMPRYYAKIHKVVSLHPFKMKISWLNSRTSTEFGTTLDWVGSGFLKTCGDFRIGRY EMGETLNAFSHEVKWTKVPRGLIRILPSKGDVWALYRNWSPEWNRNTPAEVVRRYDMVEVLEDYDEERGTPVVPLVKLKGFKTVFLKPSIDDDGDDSNVV RRIPREEMFRFSHQVPHHLLTGDEAANAPKGCLDLDPAAAPLGLLQDEMQQEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	0	1
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	2.8	0.8851
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	4.9	0.8685
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	5.2	0.8893
AT3G58050			unknown protein		Lus10029299 [exp]	6.5	0.8645
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	9.2	0.8705
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	9.9	0.8081
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	9.9	0.8467
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	11.3	0.8368
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	11.6	0.8626
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	12.0	0.8770

Compare expression of checked genes

Lus10038816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.