Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 536 / 0 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 356 / 7e-118 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 350 / 7e-115 PRORP3 proteinaceous RNase P 3 (.1) AT5G60430 67 / 6e-13 drug transmembrane transporters;antiporters (.1.2) AT2G01740 59 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G21222 59 / 5e-09 protein kinase family protein (.1) AT2G15630 55 / 1e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 54 / 2e-07 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G79490 53 / 4e-07 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 52 / 7e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014928 [exp] 725 / 0 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10039049 [exp] 707 / 0 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 703 / 0 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 357 / 2e-114 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 336 / 2e-109 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10043379 [exp] 248 / 2e-78 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10000909 [exp] 59 / 8e-09 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012180 [exp] 57 / 2e-08 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 57 / 3e-08 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074100 [exp] 568 / 0 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.017G144900 [exp] 566 / 0 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 360 / 6e-119 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 357 / 9e-118 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.006G160300 [exp] 343 / 7e-109 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.004G166600 [exp] 56 / 7e-08 AT4G34830 1044 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 55 / 1e-07 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.001G276500 [exp] 53 / 3e-07 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 53 / 4e-07 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G108300 [exp] 52 / 7e-07 AT3G16890 771 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0280 [flax] [poplar] PIN PF11977 [flax] [poplar] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Lus10038817 pacid=23150679 polypeptide=Lus10038817 locus=Lus10038817.g ID=Lus10038817.BGIv1.0 annot-version=v1.0 ATGTCCTTTCTCCACAATAGCTATCATCACCACACTTTGAAAGTTAATACTAAAGCTCACCACTTTGGAAGAGGAGCCAATCTTTGTAGCCTGGCATCCT CTGCAGTGTCCCGTACTCCTCAGTCATCATCAGCATCGTCATCAGTGGCTAGAGTTTCCGGGAGAGAAAGGAAATCACAGAGGAAAGCTGCCCGAAATTC ACCTGAGGGGAAACTTAGGCAGAAGTTTGATAGGTGCTCGAAAACCGGAGATTTAGACGAAGCACTTCGACTGTATGACGAGGCACGAAGCGATGGTATA CCTCTTAACCAACACGTTTACAATGCGTTGCTATACTTGTGCTCTTTGGATGAGGTGAAGTCATCTGATTTAGGTCTGAAAAGGGGGTTTGAGATATTCC AACAGATGGTCAACGACAAAGTTGATCCGAACGAAGCGACATTTACAAACGTGGCCAGGATTGCTGCAGGATTGGAAGATCCGGATAAGGCTTTCGAGTT GGTTAAGCAGATGAAAACTTTCAACATCCCTCCGAAGCTGAGATCGTACGGTCCAGCATTGTTCGGATACTGTAGTAATAAAGAGATGGCTGATAGAGCT TATGAAGTGTATTTGGATATGATTGGTTGTAAAGTGGTCCCTGAGGAGCCTGAGGTTTCTGCTCTTTTGAAAGTGAGTTCCGATGCAGTGAAGTGGGATG TGAAGAACGTGAGGGAAGGAGTTGTTAAGGGAGGTGGAGGATGGCATGGGCAAGGTTGGTTAGGGACCGGGAAGTGGAATGTTGTGAGGACTCGATTGGA CGAGGATGGTGTTTGTTGTGGTTGCAAGGAGAAGCTCGTTTGCATTGATATTGATCCGAGGGAGACGGAGCATTTCGCTAGCTCGTTGAGTTACTTGGCC TGCAAGAAAGAAGTCAAATCAGATTTCATCAGGTTCCAGAACTGGCTCCGGCGGTATGGTCCATTCGATTCAGTTGTTGATGGAGCAAACATAGGCTTAG CCAACCATTTGCAGTTCAACTTTCAACAGCTTAGTAATGTCGTGAACAAACTCCGGGAAATGAATCCATCAAAGAGATACCCTCTTATTATCTTGCATAA GAGCCGTGTAAAGGGAGGTTCTGCTAATCCAAACAATCAGAGGCTGTTGGAGAGATGGATGAACTCTGGAGCGCTTTATGCCACTCCGCCCGGTTCGAAT GATGATTGGTACTGGTTATATGCTGCTGTGAGATTCAAGAGCTTGTTGGTGACCAATGATGAGATGAGAGACCACTTGTTCCAATTGCTCGGGACGTCCT TCTTTCCTAGATGGAAGGAGAAGCATCAGGTTCGGATATCAGTATCGAATTCCGAAGTGAAACTACACATGCCGCCTCCGTATTCGATTGTTACTCAGGA GTCCGAAACGGGTAGTTGGCACGTCCCGATGAAAACGGATGACGGTCTCGAGACCACAAGACAATGGCTATGTGCAACTAGATAG
AA sequence Show only first row Show all	>Lus10038817 pacid=23150679 polypeptide=Lus10038817 locus=Lus10038817.g ID=Lus10038817.BGIv1.0 annot-version=v1.0 MSFLHNSYHHHTLKVNTKAHHFGRGANLCSLASSAVSRTPQSSSASSSVARVSGRERKSQRKAARNSPEGKLRQKFDRCSKTGDLDEALRLYDEARSDGI PLNQHVYNALLYLCSLDEVKSSDLGLKRGFEIFQQMVNDKVDPNEATFTNVARIAAGLEDPDKAFELVKQMKTFNIPPKLRSYGPALFGYCSNKEMADRA YEVYLDMIGCKVVPEEPEVSALLKVSSDAVKWDVKNVREGVVKGGGGWHGQGWLGTGKWNVVRTRLDEDGVCCGCKEKLVCIDIDPRETEHFASSLSYLA CKKEVKSDFIRFQNWLRRYGPFDSVVDGANIGLANHLQFNFQQLSNVVNKLREMNPSKRYPLIILHKSRVKGGSANPNNQRLLERWMNSGALYATPPGSN DDWYWLYAAVRFKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRISVSNSEVKLHMPPPYSIVTQESETGSWHVPMKTDDGLETTRQWLCATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	0	1
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	8.9	0.7983
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	12.7	0.8063
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10014536 [exp]	14.5	0.7827
AT5G09390			CD2-binding protein-related (....		Lus10015844 [exp]	18.7	0.8016
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	20.9	0.8063
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	24.2	0.8022
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	32.8	0.8053
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	40.5	0.7712
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	46.7	0.7299
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	56.5	0.7785

Compare expression of checked genes

Lus10038817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.