Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53180 546 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G01150 446 / 4e-156 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT1G43190 124 / 3e-31 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014931 [exp] 706 / 0 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10005233 [exp] 462 / 2e-161 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10030688 [exp] 443 / 2e-154 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10028566 [exp] 84 / 3e-17 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 79 / 1e-15 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G029300 [exp] 586 / 0 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 573 / 0 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.004G123300 [exp] 474 / 4e-166 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.017G085400 [exp] 469 / 6e-164 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.002G066000 [exp] 118 / 2e-29 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 117 / 6e-29 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10038820 pacid=23150684 polypeptide=Lus10038820 locus=Lus10038820.g ID=Lus10038820.BGIv1.0 annot-version=v1.0 ATGTCGTCTGTATCGAGCCAGCCGCAGTTTCGCCTCACTCAGCCACCGTCTAAGGTGCTGCACTTGCGAAACTTGCCATGGGAGTGTACGGAGGAAGAAC TGATCGAGCTTGGGAAGCCCTTTGGTAGAGTTATCAACACTAAGTGCAATGTGGGTGCGAACAAAAACCAGGCGTTCATAGAATTTGCGGATTTGAACCA AGCCATTGCGATGATATCTTACTACGCTTCATCTTCCGAGCCAGCACAAGTGAGAGGGAAGACAGTCTATCTGCAGTACTCTAACAGGCAAGAAATCGTG AACAACAAGACAACGGCTGATGTTGCAGGGAATGTGTTACTTGTGACCATTGAAGGTGACGATGCTCGGCTTGTCAGCATCGACGTTTTGCACCTGGTGT TTTCAGCTTTTGGGTTTGTGCATAAGATTACAACTTTCGAGAAGACGGCTGGGTTCCAGGCGCTCGTGCAATTTACTGACACCGAAACTGCTACGTCTGC GAAAAATGCACTCGATGGAAGAAATATTCCTAGGGATTACACTAATCCGAATCTTCCTGTTGCGCCGTCAGCTATAGATGGAAGTGGTCTGTTTGCTGTT GGTATTGATGGCAAGAAACTAGAGCCTGAAAGTAATGTTCTTCTTGCATCAATAGAGAACATGCAGTACGCTGTCACATTGGATGTTCTCCACATGGTCT TCTCTTCTTTTGGACCTGTTCAGAAGATTGCCATGTTCGATAAAAATGGCGGACTTCAGGCTCTGATTCAGTATCCTGATGTCCAGACTGCTGTTGCAGC AAAAGATGCATTGGAAGGACACTGTATCTACGATGGAGGCTTTTGCAAGCTTCATATTTCATACTCGCGCCATAATGATCTCAGCATAAAGGTCAATAAC GATAGAAGCAGGGACTACACGATCCCCAACACTCCTCCATTGATGAACCCTCAACCTTCGCTCCTTGGACAGCAGCCACCGCAAAATGCAGGTCCCTCTC ACCCGTATGGAGGAAGCCAGTATCCTCCTCCAACAACTGACCATCATTCGATGATGGCCCCACAAACTTCGGCTGGATGGGGTTCGCCCACAGGCATTCC ACCAGGTGCTCCTATGCACCACCAGCAACCAATGCATAACAATGCATACATGCAGCAGCCCCATCAACACGGAATGATGCATATGCCGCCCCACGGTGGG ATGCCACCAAGCGGTACCATGCCGCACTATAGACCTGCTCAATAG
AA sequence Show only first row Show all	>Lus10038820 pacid=23150684 polypeptide=Lus10038820 locus=Lus10038820.g ID=Lus10038820.BGIv1.0 annot-version=v1.0 MSSVSSQPQFRLTQPPSKVLHLRNLPWECTEEELIELGKPFGRVINTKCNVGANKNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV NNKTTADVAGNVLLVTIEGDDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFTDTETATSAKNALDGRNIPRDYTNPNLPVAPSAIDGSGLFAV GIDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVAAKDALEGHCIYDGGFCKLHISYSRHNDLSIKVNN DRSRDYTIPNTPPLMNPQPSLLGQQPPQNAGPSHPYGGSQYPPPTTDHHSMMAPQTSAGWGSPTGIPPGAPMHHQQPMHNNAYMQQPHQHGMMHMPPHGG MPPSGTMPHYRPAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	0	1
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	4.5	0.8755
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	7.4	0.8654
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	12.7	0.8692
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	17.2	0.8676
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	17.3	0.8675
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	19.9	0.8562
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	20.0	0.8396
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	22.2	0.8137
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	22.9	0.8613
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	26.5	0.8339

Compare expression of checked genes

Lus10038820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.