Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24120 489 / 4e-163 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1) AT5G53210 135 / 3e-34 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G08540 128 / 1e-30 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT2G36990 119 / 1e-27 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT3G06120 103 / 6e-25 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 99 / 2e-21 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 96 / 3e-21 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 95 / 8e-21 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 91 / 2e-19 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G13730 91 / 5e-19 SIGD, SIG4 sigma factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014938 [exp] 350 / 2e-113 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014934 [exp] 330 / 2e-106 AT5G24120 250 / 1e-80 SIGMA FACTOR 5, sigma factor E (.1) Lus10001066 [exp] 238 / 2e-70 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 233 / 1e-68 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001339 [exp] 138 / 7e-34 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 138 / 7e-34 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10020325 [exp] 112 / 3e-25 AT1G08540 534 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10005668 [exp] 109 / 1e-24 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10007139 [exp] 107 / 2e-24 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022100 [exp] 512 / 4e-172 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.012G031100 [exp] 506 / 1e-169 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.012G031800 [exp] 256 / 6e-77 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G022300 [exp] 219 / 2e-63 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 165 / 3e-46 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G044200 [exp] 135 / 8e-33 AT1G08540 588 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.013G070500 [exp] 128 / 1e-30 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.002G101900 [exp] 120 / 2e-29 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G125700 [exp] 112 / 1e-25 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.001G314400 [exp] 100 / 4e-22 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04545 [flax] [poplar] Sigma70_r4 Sigma-70, region 4 CL0123 [flax] [poplar] HTH PF04542 [flax] [poplar] Sigma70_r2 Sigma-70 region 2 CL0123 [flax] [poplar] PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain CL0123 [flax] [poplar] HTH PF04539 [flax] [poplar] Sigma70_r3 Sigma-70 region 3
Representative CDS sequence Show only first row Show all	>Lus10038823 pacid=23150334 polypeptide=Lus10038823 locus=Lus10038823.g ID=Lus10038823.BGIv1.0 annot-version=v1.0 ATGTCGGAATACTTTCTAGAAGGCTGCTCCGAGTTCGGCGGCAGCGGCGCCGACGACCTCTTCGCCATCTTCGAGTCCCTCGACCGCGCCAACAACACCC ACACCGCCGGTAAAGAAGAAGAAGAAGGACAACAACAGCCCAAGAGCAAGAAGCGGAAGATTGCGGCGGCGGCAGCGGGGAGTGGCGGCTGTGATGATGA CGTGGAGGTGGGAGGTGACAGGATGTCGCATATAACGGTGGAGAGGAACCGGCGGGAGCAGATGAACGAGCATTTGGGTGTGTTGAGGTCCCTAATGCCT TCCTTCTATGTCAAACGAGGAGACCAAGCCTCCATAATAGGAGGAGTCGTGGACTACATCAACGAACTACAACAGATCCTCGGATCCCTCGAAACCAAAA AGCAACGAAAACTGTACAGCACCGATGTCTCGAGCCCTCAACTCCCCGTTGTCGCTAATAATCCAAGGCCGTCACAATTAATAAGCCCTAGAAAATCACC ATTGAGCCCTAAACCACCGTCCACGATCATCAACCTGCCGCCCATAAGCCCACGAACCCCTCAACCCACCAGCCCATACATAGACATTGTTCCTACCACC ACCAAAAGGACGTCATTTCTACCCTCCCCAACGGGGTCGTCTAACTCATCCTCAAATGTCATGATGATTAACGGCGGCATGGGGATAATTAGCTGTAACA ACAACAATAATAACAACGATGTAGTGGCTAACTGTAAGTCAGCCATTGCTGACGTGGAGGTGAAGTTTTCAGGGCCCCACCTGATTCTAAAGACCGTATC TCCCAGAATTCCTGGCCAGGCTGTAAAAATCATCGCGGCTCTCAAAGACCTATCGCTCGAGATCCTGCATGTTAATGTGGACACCGTGGAGGAAAGCTTG CTTGTTAATTTCTTCACTATCAAGATTGGAATTGAATGCCAACTAAGTGCCGAGGAGCTTGCTCAACAAATCCAGCAAACATTCTTTCTGCCACGACACC CTCCTCCCAAACGACACCGTATGACAACCGTGAAGGTTTGCCTTATGAACTTGTACCCTTCAGCTGCTGTCTCAACTCTGTTTTTTTTCGATTGCCGATT TGAAATCGTTGGCTGCTGCAACGGCTTGTTCTGCATTGCCAATAGCGTCCGGTGGAGGGCAACTCAGCTGATTCTTTGGAACCCCTCAACTTTAGAGACT AAGGTCTTGCCCAAGTCGATTAATGGTTTTGAGTTTGACTCGGAGCATCGATTCTTCTTCCTCTCGATACCCACAACCTCCGCCGCCGGAAATTCGCCTG AGTTTGAATCGCCAGTGAATCTCCGTGCCAAAATATCAACTGGGTTTCTTCCGGTTGGTCGTATAGGGGAGTTTGTTCGTGGTACTAGTTTATGTCAGAG TGTTTATGAAATGGCTTTGTCTGTGATGGGAGTTGTAACAGTTTCCAGCTCAGCATCAAGGACACCAGTGGGAATCACAGCTCGAATTTCGAGCAATGGA TCATCATCGTCCTCGTCATCATCCTTATCATCATCCTCGTCATTACCTTCAAGGCGATCGGTGATAGTAGCATTCAAGATAGACAAGCTAGATCATATAG CCTCATCATTAGTCTCACCTGACAGCAAGGCAAAGAAAGGGCGGCCCCGAAAAGTCAAGGGAACGCCTGTCGTGCCCACGTTGGACAACTTGGACTACTA CAACGAGGCCGCGGCCAAGCTGGAGACTCTGTACAAACTCAGCCCTCCTTCCTCAGATGTCGAGGAAGAAGAAGAAGTTGGAACAAGGGAGAGGAAGAGG AAGGCCCGAGATGGGTTGAAAGCGGGTAGAGTCGTGGTTAGGAACTGGGAGAAGAAACCGAAAAGGTTGAGCCTTGATGGGAGGGTAGCTCTTAAGAAGA TTAATCATGGCAATGTGGGTTGTGGAAAAAGGAGGAGTGTAGTTAATAAGGATGATGATGAAGAAGTCGGGAAGATCGAGGAGCTCGTGAGGCAGTACAC GGGCTCGACGAGTATGGCTAGCTTGGACTGGAAGAAGATGAAGATCCCTCCCGTTCTTACTTCTTCAGAGCACACCTGGCTGTTCAATCTGATGCAGCCT ATGAAGGCTGTAATGCAGCTTAAAGATGAGCTGCAGAAAACAATGGGGAAGGTGCCAACCGACGTCCAATTAGCAGACGCCGCGAATTCGACTGTTTTCG AGATTAGGAGACAGTTGGAGACTGGCCAAGCTGCAAGGAACAAGCTCATTAAGCACAACCTGAGGTTGGTATTGTTTGTAATCAACAAATACTTCTCGGA CTTTGCAAACAGCTCGAGATTTCAAGACCTGTGCCAGGCTGGAGCGCAGGGGCTGATCACTGCAATTGACCGGTTCGAACCCAAGAGGAAGTTGAAGCTA TCTACATACGGTCTGTTCTGGATCAGGCACTCGATAATTCGCTCGATGACCGTCTCGAGCTTTATCCATGTCCCATTTGGCCTCGAATCGATCAGAGCTG ATATCCAGAAGAAGAAGCTTCAGTTACTGGTGGAGCTTCAACGCGAACCGAACGATGAGGAAATCGCAGAGCGAGTTGGGATCTCTATGGAGAGGTACCG TGAAGTGATCAGGGCGGGGAGACCGGTTCTGTCTTTACACTCGAGGAATCCGGTTACTCAAGTTGAGTTGATCAATGAGATTGCGGACATGAACGGTGGC GAAAACCGGAGAAGGCCGGCTCTTCTTAGGCTTGCTCTTGATGATGTGCTGGACTCGCTGAAGCCGAAGGAGAGCTTGGTGATCAGGCAAAGATACGGGC TTGATGGCAAAGGCGATCGGTCGCTGAGCGAGATTGCTGCCAACTTGAACATCTCGAGAGAAATGGTTCGTAAGCATGAGGTCAAGGCGCTCATGAAGCT CAAGCACCCTGCTCGAGTCGATCACCTTCGCCAATATGTCGTCTGA
AA sequence Show only first row Show all	>Lus10038823 pacid=23150334 polypeptide=Lus10038823 locus=Lus10038823.g ID=Lus10038823.BGIv1.0 annot-version=v1.0 MSEYFLEGCSEFGGSGADDLFAIFESLDRANNTHTAGKEEEEGQQQPKSKKRKIAAAAAGSGGCDDDVEVGGDRMSHITVERNRREQMNEHLGVLRSLMP SFYVKRGDQASIIGGVVDYINELQQILGSLETKKQRKLYSTDVSSPQLPVVANNPRPSQLISPRKSPLSPKPPSTIINLPPISPRTPQPTSPYIDIVPTT TKRTSFLPSPTGSSNSSSNVMMINGGMGIISCNNNNNNNDVVANCKSAIADVEVKFSGPHLILKTVSPRIPGQAVKIIAALKDLSLEILHVNVDTVEESL LVNFFTIKIGIECQLSAEELAQQIQQTFFLPRHPPPKRHRMTTVKVCLMNLYPSAAVSTLFFFDCRFEIVGCCNGLFCIANSVRWRATQLILWNPSTLET KVLPKSINGFEFDSEHRFFFLSIPTTSAAGNSPEFESPVNLRAKISTGFLPVGRIGEFVRGTSLCQSVYEMALSVMGVVTVSSSASRTPVGITARISSNG SSSSSSSSLSSSSSLPSRRSVIVAFKIDKLDHIASSLVSPDSKAKKGRPRKVKGTPVVPTLDNLDYYNEAAAKLETLYKLSPPSSDVEEEEEVGTRERKR KARDGLKAGRVVVRNWEKKPKRLSLDGRVALKKINHGNVGCGKRRSVVNKDDDEEVGKIEELVRQYTGSTSMASLDWKKMKIPPVLTSSEHTWLFNLMQP MKAVMQLKDELQKTMGKVPTDVQLADAANSTVFEIRRQLETGQAARNKLIKHNLRLVLFVINKYFSDFANSSRFQDLCQAGAQGLITAIDRFEPKRKLKL STYGLFWIRHSIIRSMTVSSFIHVPFGLESIRADIQKKKLQLLVELQREPNDEEIAERVGISMERYREVIRAGRPVLSLHSRNPVTQVELINEIADMNGG ENRRRPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRSLSEIAANLNISREMVRKHEVKALMKLKHPARVDHLRQYVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	1.0	0.9729
AT3G52740			unknown protein		Lus10017046 [exp]	1.4	0.9627
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	2.4	0.9494
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	3.3	0.9300
AT2G35490			Plastid-lipid associated prote...		Lus10030987 [exp]	3.5	0.9405
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	4.0	0.9342
					Lus10017075 [exp]	4.2	0.9334
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	4.9	0.9269
AT5G55570			unknown protein		Lus10008950 [exp]	5.5	0.9380
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10033499 [exp]	6.3	0.9099

Compare expression of checked genes

Lus10038823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.