Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41480 486 / 5e-168 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) AT5G05980 113 / 1e-26 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 108 / 6e-25 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT3G10160 95 / 3e-20 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014939 [exp] 898 / 0 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10040261 [exp] 106 / 4e-24 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10030161 [exp] 99 / 1e-21 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 97 / 6e-21 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 74 / 1e-13 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022400 [exp] 587 / 0 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Potri.008G060600 [exp] 116 / 2e-27 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 114 / 8e-27 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.006G045400 [exp] 105 / 7e-24 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.016G041800 [exp] 91 / 6e-19 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10038824 pacid=23150546 polypeptide=Lus10038824 locus=Lus10038824.g ID=Lus10038824.BGIv1.0 annot-version=v1.0 ATGAGATTTTTAAATCGTTTTGTCTCCGATGTCTTCGATTTACCGATCGGAATCCGAGCTAGAATCCAACCCAACTGCGGATTCGATTCAAGCTCGAAGA TGTCACAAATCTCCAAGCGGTTCTTCTCCATTTCCTGTGATGAGACGGAGCTCAAGGAGTTCACCCACTACCTCGATTCTCTCACTAACTACGAGAGATC GGGAGTTCCGAAGGACGCCGGTACTGATTCCGACGACGGACTCGATCTGGGTAGGATGCGGCGGCTCATGAATCGCCTTGGTGATCCTCAATCCAAGTTC AAGGCTGTTCATATTGCTGGAACTAAAGGGAAAGGGTCTACTGCTGCTTTTGTTTCCAATATTTTGAGAGCTGAAGGCTATTCAGTTGGTTGCTATACCA GTCCACACATTATGAGTATAAGGGAGAGGATGACGATAGGGAAATCTGGTGATCCAGTGTCTGCAAAATCTCTGGATCGCCTTTTTCGTAAGATAAAGGG GCGGCTCGATGAAGCTGTTCATCTCGAAAATGGTCGTCTGACTCATTTTGAGATTTTTACAGCTACTGCATTTGCCCTATTCGCCGAGGAGAATGCAGAC ATTGCAGTGATTGAGGCTGGGCTTGGAGGTGCGCGAGATGCAACGAACATCCTATCAAGTTCTGACCTTGCTGTTTCGGTTATAACCACAATTGGCGAAG AGCATCTAGCTGCCCTTGGAGGTTCGCTTGAGAGCATTGCAATGGCAAAGGCAGGAATCATAAAACTCGGTCGTCCAACAGTGATTGGGGGCCCTTTCCT ACCACACATTGAGCAGATAATTCGCGATAGAGCCGCAATGATGAGCTCCCCAGTGGTATCAGCGTGTGATGCTGGGATCAGGGCCACCATTAAAGGACTT GGTGTGAACGACATCAAGATACAAGTTCAGCATCAGAGTTTTGACCTGTCTCTTGAGCTATCAGACTTCAACTTGCAAATGCTCGGAATGCACCAACTTC AAAATGCTGTAACTGCTGCTTGCACTATCCTTTGCCTCCGTAACCAAGGATGGCAAGTCTCGGATAAATCGATCCGTGCTGGTCTCGAGAGTACACGCTT ACTCGGAAGAAGTCAGTTTCTATCATCGAACGAAGCTGAGGCGTTAGGATTACGTGGAGTAACGATACTTGTCGATGGAGCTCATACCAAAGAATCGGCC AAGTCGTTGATGGACACAATACAGATGGCCTTCCCCGATGCAGAACTAGCCTTCGTGGTCGCGATGGCCAGCGACAAGAACCATCTAGCATTCGCCAGAG AAATCCTATCAGCTAGAAGATTGGCTGCAGTGTTCCTAACAGAAGCCGAGATAGCCGGAGGAAAGTCACGAACGACATCGGCTGACTGGCTGAGAGACCA ATGGGTTCGAGCCTGCAAGGAATTGGGAAGTTCGACTCTTTTGGTGGCCGAGGGATCGATTGGAGCTGCAGTTCGAGCTGCGGCAGAAATTCTCGAAAGA AGAAGAAGAACAAGTGAAGGGAAGAGCAGGGCTGGTGTTGTTGTGGTCACTGGGTCTCTTCATGCTGTCGCATCTGTACTTTGA
AA sequence Show only first row Show all	>Lus10038824 pacid=23150546 polypeptide=Lus10038824 locus=Lus10038824.g ID=Lus10038824.BGIv1.0 annot-version=v1.0 MRFLNRFVSDVFDLPIGIRARIQPNCGFDSSSKMSQISKRFFSISCDETELKEFTHYLDSLTNYERSGVPKDAGTDSDDGLDLGRMRRLMNRLGDPQSKF KAVHIAGTKGKGSTAAFVSNILRAEGYSVGCYTSPHIMSIRERMTIGKSGDPVSAKSLDRLFRKIKGRLDEAVHLENGRLTHFEIFTATAFALFAEENAD IAVIEAGLGGARDATNILSSSDLAVSVITTIGEEHLAALGGSLESIAMAKAGIIKLGRPTVIGGPFLPHIEQIIRDRAAMMSSPVVSACDAGIRATIKGL GVNDIKIQVQHQSFDLSLELSDFNLQMLGMHQLQNAVTAACTILCLRNQGWQVSDKSIRAGLESTRLLGRSQFLSSNEAEALGLRGVTILVDGAHTKESA KSLMDTIQMAFPDAELAFVVAMASDKNHLAFAREILSARRLAAVFLTEAEIAGGKSRTTSADWLRDQWVRACKELGSSTLLVAEGSIGAAVRAAAEILER RRRTSEGKSRAGVVVVTGSLHAVASVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	0	1
AT1G08220			unknown protein		Lus10021398 [exp]	2.8	0.8591
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	3.6	0.8528
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10024249 [exp]	6.6	0.8198
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	7.6	0.8713
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	7.6	0.8285
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	8.0	0.8708
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	8.5	0.8242
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	10.5	0.8677
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	12.3	0.8734
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	16.2	0.7927

Compare expression of checked genes

Lus10038824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.