Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64230 302 / 2e-107 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 301 / 7e-107 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 300 / 2e-106 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 300 / 2e-106 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 295 / 1e-104 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 281 / 3e-99 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT2G16740 276 / 4e-97 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08700 249 / 1e-86 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G13550 166 / 4e-53 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G16890 152 / 7e-48 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014942 [exp] 309 / 4e-110 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 306 / 5e-109 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 306 / 5e-109 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 303 / 8e-108 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10033937 [exp] 300 / 9e-107 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10022726 [exp] 299 / 5e-106 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 299 / 5e-106 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 296 / 3e-105 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027846 [exp] 285 / 9e-101 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033000 [exp] 306 / 7e-109 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 306 / 7e-109 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 305 / 1e-108 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 303 / 9e-108 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 301 / 5e-107 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 300 / 1e-106 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 300 / 1e-106 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.011G168200 [exp] 293 / 1e-103 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 293 / 1e-103 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.004G175000 [exp] 288 / 4e-102 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10038827 pacid=23150381 polypeptide=Lus10038827 locus=Lus10038827.g ID=Lus10038827.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAGCGCATCTTGAAGGAGCTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGTGCTGGTCCCGTTGCGGAGGACATGTTCCACTGGC AAGCAACGATCATGGGTCCTCCGGACAGTCCTTATTCTGGTGGTGTTTTCCTGGTCACTATCCATTTCCCGCCGGATTATCCATTCAAGCCTCCCAAGGT GGCTTTCAGAACAAAGGTATTCCACCCGAATATCAACAGCAACGGTAGCATCTGTCTCGACATCTTGAAAGAACAGTGGAGCCCTGCTCTTACCATATCC AAGGTGTTGCTCTCCATCTGCTCGTTGTTAACGGATCCCAACCCAGACGACCCATTGGTGCCCGAGATTGCCCACATGTACAAAACAGACAGGCACAAGT ACGAGACGACTGCAAGGAGCTGGACCCAGAAGTATGCCATGGGATGA
AA sequence Show only first row Show all	>Lus10038827 pacid=23150381 polypeptide=Lus10038827 locus=Lus10038827.g ID=Lus10038827.BGIv1.0 annot-version=v1.0 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRHKYETTARSWTQKYAMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	0	1
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	1.0	0.9536
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	1.4	0.9405
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	1.7	0.9405
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	3.0	0.9363
AT5G11680			unknown protein		Lus10020200 [exp]	6.6	0.9399
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	7.1	0.9393
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	7.4	0.9146
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	11.0	0.9334
					Lus10011059 [exp]	11.1	0.9199
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	14.1	0.9372

Compare expression of checked genes

Lus10038827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.