Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 592 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 551 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 546 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 533 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 516 / 2e-177 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 494 / 7e-168 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 468 / 1e-157 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 427 / 1e-141 RKL1 receptor-like kinase 1 (.1) AT3G17840 402 / 4e-132 RLK902 receptor-like kinase 902 (.1) AT3G02880 397 / 1e-130 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014943 [exp] 1070 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 777 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 766 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 641 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 565 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 549 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 549 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 545 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 545 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033200 [exp] 730 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 728 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 668 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 666 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 548 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 544 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 540 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 522 / 3e-178 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 518 / 5e-177 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 439 / 8e-147 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038828 pacid=23150527 polypeptide=Lus10038828 locus=Lus10038828.g ID=Lus10038828.BGIv1.0 annot-version=v1.0 ATGGAGATCAAAACTCCATTGACATCCTATGCAATCCTCTTCATTGTGGCAGTTTCAGTACTCCACACCACAGCAGTGCCAACCGAAGACAAACAAGCTT TACTAGAATTCAAACGCGGGATTATTCACATTTCCCACTCTCTCAACTGGGAAGAGACCTCCCCTGTATGCACAGAATGGACCGGAGTGACGTGCAACCA CGAGGAATCTCGAGTCGCGGGGCTACGGCTCCCCGGGATGGGGATTCGCGGTCCTGTCCCTCCCAACACGCTGAGCAGGCTGTCGGCTGTTCAGATCTTG AGCCTCAGGTCAAACCGAATTTCAGGGGATTTTCCTGATGACTTCTTCAGGCTGGGTAACTTGACAAGTCTTTATCTACAGGGGAACATGTTTACGGGCT CGTTGCCTTCGGATTTCGGAGCTTGGAAGAGGAGTCTTAGTGTTCTTGATCTATCGGAGAATGGGTTTGATGGCGGGATTCCGGGTTCGGTGTCGAATTT GACTCATCTCACGTCGTTGAATCTCGCTGGCAATGCTCTTTCAGGTGAAATTCCTGACATAAGTGTTCCTAGTCTACAGAGTCTGAACCTGACCAACAAC CATCTCACGGGAACCGTCCCTCGGTCTCTGATGTTAAGGTATCCACCCTCTGCATTCTCTGGTAACAATCTCTCGTTGCAACCCGCACTTCCTCCCGCTA TCCTAGTCGAACCACCAAACCCTCAACCTTCAACCGGCAACAATAACAACAACAAGAAGCTAAGCGAACAAGCAATCTTGGGGATCGTGCTAGGAACCTG CGTGGTGGGGTTCTTTTCTGTCGTGATTTTGATGATATGTTGCTACTCAAAGAAAAAAGCCAAGAAGGATACTGGATTGCCAACCAGTTCGAATTCGAAT AAAAAGAAGAAGAAGGAAGACCTTTCGAAGAAAGATTCGGATGATCACAGGCTCTTGTTCTTCGAAGGGTGCAGTCTGGCATTTGACTTGGAAGACCTGC TGAGAGCGTCGGCGGAAGTGATGGGAAAGGGCACTTACGGCACGACTTATAAGGCCGCGCTGGAGGATGCGAGGACGGTGGCGGTTAAGAGGCTGAAGGA AGTGACTGTTGCTCGAAAGGATTTCGAAAATCGGATGGAGGTTGTTGGGAGGATTAAGCATGAGAATGTGTGTGCACTTAGGGCTTATTACTACTCCAAG GACGAGAAGCTCATGGTTTATGATTTCTATGACAAGGGGAGCTTGTCTGTTATGTTACATGGCAAAAGAGGGGAAGACAGAACACCATTAGACTGGGAGA CAAGAATTAGAGTTGCAATGGGTGCAGCAAAGGGCATTGCATACATCCACACACACCAAACCAAGGTCCATGGAAACATAAAAGCATCAAACATCTTTCG AAACTCCGACGGGTACGGATCCATCTCGGACCTCGGGATAGCCACACTGATGAGTCCAATCCCCGCACCGGTTCAAAAATCCGGTACAGGATACTGCGCC CCGGAGATACTAGACCCAAGGAAAGCCACCTTGGCATCCGACGTGTACAGCTTCGGAGTTTTAATACTAGAGCTACTCACCGGGAAATCTTCAACATCAC CAAATGTAAACCTGGTGAGATGGGTGAATTCCGTGGTGAGGGAGGAATGGACCGCCGAGGTGTTTGATTTGGAGCTTCTAAGGTTTCCGAATATCGAGGA GGAGATGGTGGAGATGCTTCAAATAGGGATGAGTTGTGTAGGGCGAATGCCCGAACAGAGGCCGAAGATGGCTGATGTTGTGAAGATGGTGGAAGGGATT CGACGGTTAAGCCCCGGAGTAAGCCATGCATTATCTTCAGATGTTGGAGTCGGGATTGCTATGTCGACCCCGACACCTCCAGCATCTGCCGGTACCTCTT CGGGTCTGTAG
AA sequence Show only first row Show all	>Lus10038828 pacid=23150527 polypeptide=Lus10038828 locus=Lus10038828.g ID=Lus10038828.BGIv1.0 annot-version=v1.0 MEIKTPLTSYAILFIVAVSVLHTTAVPTEDKQALLEFKRGIIHISHSLNWEETSPVCTEWTGVTCNHEESRVAGLRLPGMGIRGPVPPNTLSRLSAVQIL SLRSNRISGDFPDDFFRLGNLTSLYLQGNMFTGSLPSDFGAWKRSLSVLDLSENGFDGGIPGSVSNLTHLTSLNLAGNALSGEIPDISVPSLQSLNLTNN HLTGTVPRSLMLRYPPSAFSGNNLSLQPALPPAILVEPPNPQPSTGNNNNNKKLSEQAILGIVLGTCVVGFFSVVILMICCYSKKKAKKDTGLPTSSNSN KKKKKEDLSKKDSDDHRLLFFEGCSLAFDLEDLLRASAEVMGKGTYGTTYKAALEDARTVAVKRLKEVTVARKDFENRMEVVGRIKHENVCALRAYYYSK DEKLMVYDFYDKGSLSVMLHGKRGEDRTPLDWETRIRVAMGAAKGIAYIHTHQTKVHGNIKASNIFRNSDGYGSISDLGIATLMSPIPAPVQKSGTGYCA PEILDPRKATLASDVYSFGVLILELLTGKSSTSPNVNLVRWVNSVVREEWTAEVFDLELLRFPNIEEEMVEMLQIGMSCVGRMPEQRPKMADVVKMVEGI RRLSPGVSHALSSDVGVGIAMSTPTPPASAGTSSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10038828 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	5.0	0.9099
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	8.4	0.8891
AT1G11655			unknown protein		Lus10001141 [exp]	9.2	0.8848
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	11.2	0.8871
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	13.0	0.8845
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	13.0	0.8803
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	14.1	0.8746
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	20.2	0.8744
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	22.0	0.8790
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	22.8	0.8519

Compare expression of checked genes

Lus10038828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.