Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53330 183 / 4e-58 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014944 [exp] 325 / 4e-114 AT5G53330 210 / 6e-69 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023600 [exp] 221 / 3e-73 AT5G53330 216 / 3e-71 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.012G033300 [exp] 221 / 4e-73 AT5G53330 192 / 8e-62 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038829 pacid=23150683 polypeptide=Lus10038829 locus=Lus10038829.g ID=Lus10038829.BGIv1.0 annot-version=v1.0 ATGGATTACGACTACAGAAACCGATCCAACTCGCCTTACGATCCTCAGATCCCGAACTACAACAGATCACCCACCTCATCTTCGTCCGCTCATCCGATGT ACGGAGCTCCTGCTTACCCGAGAGTCGGCGGTGGATACGGCGGAGCTCCTCCCGTCGGCCGCCACCCCTCTTACCATCAGAACTCGGCTCCTCCGCCGTC TTCTTCTTCTGCCTCTGGGTTGGGGATCCGAGTGGCCTTGAAGCCTGAGTACCGTATCTCGCCGCCGCCTCAACTATTGCCGATGAGAGAGGTTCCGCGT AGCAATTTCCAGTTCGATTTCGAGTTTGAGCGGAAGCTGTTAGCTGAGGCGGAGAAAGGGGAGATCAACTGGAGCAGGCTAGGTATGGATAATTTGCCTC CTAAGGCTACTGAATCGACTTCTTCTTCATCGGGTTCAGGTGGCGATCCTGTAGTGAGCAAATACATTGCTGCCGGACTTAATCGAGAAGCTGTTCCTGT TGCAGTTGCCAACTACGGAGATAACCCGACAAAGGTTCAAGAATTCGCCAAGGGTTACACCCTACTACGAGAAATGGGATTCTCATCGAACAATGTAGCT GAAGCGCTCCTCATGAATGACAACGACACAGACAAGGCATTGGCGCATTTCCTTAACAGTCCTTCATAA
AA sequence Show only first row Show all	>Lus10038829 pacid=23150683 polypeptide=Lus10038829 locus=Lus10038829.g ID=Lus10038829.BGIv1.0 annot-version=v1.0 MDYDYRNRSNSPYDPQIPNYNRSPTSSSSAHPMYGAPAYPRVGGGYGGAPPVGRHPSYHQNSAPPPSSSSASGLGIRVALKPEYRISPPPQLLPMREVPR SNFQFDFEFERKLLAEAEKGEINWSRLGMDNLPPKATESTSSSSGSGGDPVVSKYIAAGLNREAVPVAVANYGDNPTKVQEFAKGYTLLREMGFSSNNVA EALLMNDNDTDKALAHFLNSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	1.0	0.9429
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	2.0	0.9339
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	7.1	0.9096
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	8.4	0.8904
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	8.7	0.8857
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	9.2	0.8868
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	14.7	0.9052
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	15.0	0.8772
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	15.7	0.8671
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	17.9	0.9017

Compare expression of checked genes

Lus10038829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.