Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53340 421 / 5e-148 Galactosyltransferase family protein (.1.2) AT4G32120 263 / 1e-85 Galactosyltransferase family protein (.1) AT2G25300 259 / 2e-84 Galactosyltransferase family protein (.1) AT1G77810 217 / 2e-67 Galactosyltransferase family protein (.1.2) AT1G32930 214 / 3e-66 Galactosyltransferase family protein (.1) AT1G05170 214 / 3e-66 Galactosyltransferase family protein (.1.2) AT2G32430 207 / 2e-63 Galactosyltransferase family protein (.1) AT1G11730 206 / 3e-63 Galactosyltransferase family protein (.1) AT4G26940 199 / 2e-60 Galactosyltransferase family protein (.1.2) AT1G22015 197 / 8e-60 DD46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014945 [exp] 564 / 0 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10032350 [exp] 380 / 4e-131 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 377 / 2e-130 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10001920 [exp] 238 / 3e-75 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10001954 [exp] 220 / 8e-67 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10033248 [exp] 213 / 2e-65 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10040062 [exp] 209 / 7e-64 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10008282 [exp] 208 / 7e-64 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 207 / 2e-63 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023700 [exp] 462 / 3e-164 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 432 / 3e-152 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.006G257200 [exp] 278 / 9e-92 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 268 / 7e-88 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 221 / 9e-69 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 214 / 3e-66 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 214 / 3e-66 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 207 / 9e-64 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 207 / 3e-63 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 204 / 2e-62 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038830 pacid=23150488 polypeptide=Lus10038830 locus=Lus10038830.g ID=Lus10038830.BGIv1.0 annot-version=v1.0 ATGCTAATCGGCGGCGGCGGTAAGGTATCAGGCAATCGAGGATCCGGTTCTGGCCATGGATCAAGAATATCGACTATGCTGTTCTCGATGTTTGCTACTT TCGCCTCCATTTACGTCGCTGGCCGGTTATGGCAGGATTCGCAGCATAGAGTTCATTTGATTAAAGAGCTGGACCGGATTACTGGACAGGGGCAATCTGC CATTTCAGTGGAAGATACGTTGAAGATTATTGCCTGCAGGGAACAACAGAAGAAGTTGTCAGCTGTTGAGTCCGAGCTGGTCTCAGCCAAGCAAGAAGGG TTATCTTCAGACAATGGTGCTGCTCGGGGGAAGAAACGACACCTTGTAGTGATTGGAGTCATGACAGTGTTTGGTCACAAGAATAATCGAGATGCTGTTC GTAAAGCATGGATGGGAAGTGGTGAAAGTTTGAACAAAAGGGAGACAGAGAAAGGAATAGCTGCACGATTCGTCATTGGAAGAAGCGCAACTCGTGGAGA TACCTCGGACAGAACCATTGACAGCGAAAATGAACAGACTAGTGACTTCATTATTCTCGAAGTCTTTACGACTAAAGCCATTCTTTTTACTGTTTCCGAT GCCATTTTGCCACAGGATGATCATGTTGAAGATGTCGACGGACTCTCGAAGAAGGCTAAATTGTTTTTCGCCCATGCTGTGAGCAAATGGGATGCCGACT ACTATGCAAAAGTGAACGATAATATCTATGTGGACATTGATTCCCTTGGAGCTACACTAGCAACCTATTTGGATAAACCTCGTGCCTACATTGGATGCAT GAAGTCCGGGGAAGTCTTTTCTGAACAGAGTCACAAGTGGTACGAACCAGATTGGTGGAAATTCGGTAACAAGAAATCGTACTTTCGCCATGCTTCCGGC GAGATATCTATGCTCCGCTCCTACGCACATGATGATATCAGTGCCGGGTCATGGTTTATCGGGCTCGATGTCCATCATGTTGATGAATCCAAGTTCTGCT GCTCATCTTGGACCTCAGGTCTCAGTTTTATGTCGACTTCTGTGGGTTTTGTACGAAAATTCTTGACACGCTACTAA
AA sequence Show only first row Show all	>Lus10038830 pacid=23150488 polypeptide=Lus10038830 locus=Lus10038830.g ID=Lus10038830.BGIv1.0 annot-version=v1.0 MLIGGGGKVSGNRGSGSGHGSRISTMLFSMFATFASIYVAGRLWQDSQHRVHLIKELDRITGQGQSAISVEDTLKIIACREQQKKLSAVESELVSAKQEG LSSDNGAARGKKRHLVVIGVMTVFGHKNNRDAVRKAWMGSGESLNKRETEKGIAARFVIGRSATRGDTSDRTIDSENEQTSDFIILEVFTTKAILFTVSD AILPQDDHVEDVDGLSKKAKLFFAHAVSKWDADYYAKVNDNIYVDIDSLGATLATYLDKPRAYIGCMKSGEVFSEQSHKWYEPDWWKFGNKKSYFRHASG EISMLRSYAHDDISAGSWFIGLDVHHVDESKFCCSSWTSGLSFMSTSVGFVRKFLTRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	2.4	0.8071
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	5.5	0.7938
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	6.2	0.8070
AT5G45360			F-box family protein (.1)		Lus10037278 [exp]	7.5	0.7396
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	11.2	0.7796
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	12.2	0.7974
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	13.9	0.7783
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	16.1	0.7917
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	16.4	0.7735
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	20.3	0.7744

Compare expression of checked genes

Lus10038830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.