Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52910 906 / 0 ATIM timeless family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014946 [exp] 997 / 0 AT5G52910 910 / 0.0 timeless family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024300 [exp] 1186 / 0 AT5G52910 1019 / 0.0 timeless family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04821 [flax] [poplar] TIMELESS Timeless protein PF05029 [flax] [poplar] TIMELESS_C Timeless PAB domain
Representative CDS sequence Show only first row Show all	>Lus10038831 pacid=23150559 polypeptide=Lus10038831 locus=Lus10038831.g ID=Lus10038831.BGIv1.0 annot-version=v1.0 ATGGAGACTGAAGGTCTGGCTCCGATCTGCGCCGGCCTTGGAATAGCAGAAGAGGACGACGACGGCAACCGAATTGGCTACTCCAAGGACGAGCAGTGTC TCGAGAATCTTAAGGATCTGGTGAGATTTCTGAGGCGCGATGACCCGCAGACGCGACTAGTGTTCAAGCAAGTGTGCAAATGGAACACAGTCCCTAATAA TTTGATTCCTATGTTCCAGTACTGCCAGGACGATCGCGATTTGGTCTTGAATGCTGTGAAGGTTTTGGTGTTCCTTACGATGCCGATTGATCAGTCATCG AACGATGTCAATTTACAATTAGAGTATCTTTGGGGTTTGAAGTCTGCAATAACATGCAGCGAGACAGTTGCTGTAATCGTTTCACTCTTGGAAGGACCGC TTGAAAACTTAGAGCGTGAATCATTGACAGAGGATGATTGGAAATTGATTCAGTTGGTACTGACCCTGTTTCGGAACATCCTTGCAATTCAAGATGTGCC CTTGATGGGGGGATCGGCTTGTGAATTCGTATCACTAAGGGACAGATTTCTCGAGCTGTTATTCAATGAGAATGTGATGGACTTGATTTTAGTGTTAACT CAGCATGTTGATGGCTCGCGTGGCTTTCTTCGTCATGATAACTTGCTTTTGCTAGAAGTTTTCCATTACATCTTCCTGGGGCAAGATCCCGATCTGATTG CAAAAGCTTGCTTCAAGGATTCCAAGGTAGGAAGCATTGCGTATGCTGACAATCTCAAATCTATTATGGAGGCGGAAAAACAGAAACTTAAACGATGCAG AGCACAGAATCTAGCTCGTCACTCCCAGTTCAGTGGGACATTTTCTCGGATTACCATGGATGGTTCTAAAACAGTATGCAAAGTTAATCCTGGTGCTGTT TCCAATAACTTGCTTAAGCCTAATGCTGTACAACGGGGTGCAACTAAAAAAATTGCTTGGGACCATGGAAATTTTCCTGTAACTGAGGATAAGGTCTTAG AGCTGCTACATGATTTCATGAAGCAGTTTCTCTCCGGAAGTTATAATGCTTCACCCACTGGTGTTCAAGTTTTGATCAAGTCAATTCGTGAAGATATCGA AAAGGAACAAATTGCAGTTCAGAAGAGTGATATCATTGTGTTCTTCCAAGTCGTTCAGTTTGTTACTTCATTTCAATATTACACGCTCTTGAATTCAAAG GAAACTGCAAAGGACTCTCCTCAAGCCTCTGACATTCATGATGATAGTACTTTATTCACGGGTGATGTGTGTGGACCAATTGCTGAATCAATGAAGGAAT CAATGTTTCTAATGGTTATCTCAACATGGCGGGATGCTTTTGATGCTCTAAAGCAAACACATGAATACAAGTTACTTTCTGCAGCTGGCTCAGTTATGAA AATTATGATTCGCATTTTAGACTTGGTGCTCAAGGTACTGCCTGAAAATTCTAAAGAGCCCCAGACAGCTCGCATTCTGCTTTACAAGTTATTCTATGAT CAGACTGATCAAGGGATGACCCAGTTCCTCTTGAACCTGATTAAATCATTCAACACTCATAAACAATCTAAGAGTGATCTTGCAGATTTAGTTGAAACAG TTCACGTTATTGTAAGGTTGATGGACATTCTTCAAACCCGTGGCACTATGAGGGTTTCGAAAGGATCAAGGAAGGTTCGAAAAAAGAAACCATTAAAAGA TCAGAAAGAAGCAGGAAATTTACCTTCTGGAGGTGAAGCCACCACTCAGGATAAGAACGAACAGTTGCCTGATTCAATCAGTGTCGAAACAGAAAGCCAA GAAAATGAAAAATCTAACCAACAAGCTGGCATTGACAATGCTATCCCTGCCGACAAACCTGACATATCTCCGGAGATGGGAAATCCTGACAGTAGCAGTC CACCGCTAGATAACAGAAATGATCATATAGATGATGCTCTTTCTTGCAGCTCAGATGATGACTCGGCGGATGACCAACCTGTTTCCAACTACGAAGTTGA CTTCAACGTCTCGGCTTTCATGAAATCCTTTGGAAACCACAGCATCATCAGCAATCTGTGCTGGCTGCTTAGATTCTATAAGAGCAATTCAGTCGGCACA AATCACTACATCATAACCATGTTGCGGAGGATCACAGAATACCTCGACCTTGCTCCAATGCTATATCAGTTATCACTACTCACAACATTCTACGACATCC TAAACGAGCAAAAGGCTAGCAAGCGCAAGGAATACGAGAACATTGTCGAGTTCCTTACGACCCTGGTCAGAAGAATGCTAAGAAAAATGAAGAATCAACC TCTTCTCTTCCTCGAAGTGCTCTTCTGGAAGTCTCGCACAGAATGCCAGTACATTAACACAGACTATCTAGTACACGAGCTGGGCAGCTTGAGAAAGAAG ACTAAAGCCTTCAATGGTTCTGAAGAAAATGGAGACGTTGGTTCATCAGGTGCTGCCACAGAATGGGCTCCCAGGAGCATTGCAGATGCACTGGGCGAAG ATGAAGCTGATGTCGTGATCTCTCATGACGCTGAAGATCAAGAAATGCAAGAGAACTCTGTCGAATTGCAGAATGAGAAGGCGTCAACTTCAGGCAGCAA TTTCTCCAGAAATGGAGACAAACATGAAAGAGTTCCTAAAAAGAAAAGACTTGTTCTTACTGAGGAAATGGAGATCAAGATCAAAGATCTCTACGAGGAA TTCAAGGAAAACGAGAGATGCTGCCATCTCATCGCTGAATCCCTTGATCCTACGGGTGGAATCTCACCAACACAGGTGTTCAACAAGCTGAAGCAGCTTG GGTTAAAAGCTTCATTAAGGAAACGGATACGAAATACCAGGAGAGAACCAGACTCTACCAATGCTGATGATCATCCCTCTCAAGGTGAAAAGATGACAGA AGAAGAAAGCTTGCAGAGAAAGCAATTAACTGACACTAGGAAAAGAGCTCCGGCCATTGGCAAGGATCAAGAAGATAAACTCAGAGATTTATACGAGCAG TTTAAAGGGGAAAGGAAGTGCAGTCATATGATTGCTAATGCTCTGGCACCAGAAGGTAGTTTCACTGCTGCCCAAGTTTCCCGCAAGCTCAAGCAACTAG GGTTAGTCGTTCCTCGGAAGAAGAGGTCTCAGACGGATGATTTCATCGATGACCATGAAACTGATGACGAAACATTGATGTCCTTCAAGGAGAGGAGTGC AAAGGACGCACGAGAACGAAAGAGAAGCAAAATTTCAACTCCAGAAGCCACGCCGGCGGGAGAAAAAAGTGATGTTCTCGGTGAAGAAGGTACCATCGAC GAGATTGATACACCTGCTAACGCCGATGAGCAGATGACGGCGGCGGATGACGTGGAGGAAGATGGTGGCATGGGTGATGACTCACCGGTCGATGAGGCTC GCGGTAGTGAGCTGGAGGACGATGATGATGGGAAGCTAATGGAAGAAGAGCTGGATGACGATGACGTGGACGGGAAGGTGATGGAAGATGAGCTGGAGGA CGATGACGTGGATGCTTCTCAGGTGGTGGATGATGGTGACGTGGGAGGCTCCGTTCAACAGACGCGAAGGAAGTCGAGGATGATTATTGATGACGACGAC GATGAGTAA
AA sequence Show only first row Show all	>Lus10038831 pacid=23150559 polypeptide=Lus10038831 locus=Lus10038831.g ID=Lus10038831.BGIv1.0 annot-version=v1.0 METEGLAPICAGLGIAEEDDDGNRIGYSKDEQCLENLKDLVRFLRRDDPQTRLVFKQVCKWNTVPNNLIPMFQYCQDDRDLVLNAVKVLVFLTMPIDQSS NDVNLQLEYLWGLKSAITCSETVAVIVSLLEGPLENLERESLTEDDWKLIQLVLTLFRNILAIQDVPLMGGSACEFVSLRDRFLELLFNENVMDLILVLT QHVDGSRGFLRHDNLLLLEVFHYIFLGQDPDLIAKACFKDSKVGSIAYADNLKSIMEAEKQKLKRCRAQNLARHSQFSGTFSRITMDGSKTVCKVNPGAV SNNLLKPNAVQRGATKKIAWDHGNFPVTEDKVLELLHDFMKQFLSGSYNASPTGVQVLIKSIREDIEKEQIAVQKSDIIVFFQVVQFVTSFQYYTLLNSK ETAKDSPQASDIHDDSTLFTGDVCGPIAESMKESMFLMVISTWRDAFDALKQTHEYKLLSAAGSVMKIMIRILDLVLKVLPENSKEPQTARILLYKLFYD QTDQGMTQFLLNLIKSFNTHKQSKSDLADLVETVHVIVRLMDILQTRGTMRVSKGSRKVRKKKPLKDQKEAGNLPSGGEATTQDKNEQLPDSISVETESQ ENEKSNQQAGIDNAIPADKPDISPEMGNPDSSSPPLDNRNDHIDDALSCSSDDDSADDQPVSNYEVDFNVSAFMKSFGNHSIISNLCWLLRFYKSNSVGT NHYIITMLRRITEYLDLAPMLYQLSLLTTFYDILNEQKASKRKEYENIVEFLTTLVRRMLRKMKNQPLLFLEVLFWKSRTECQYINTDYLVHELGSLRKK TKAFNGSEENGDVGSSGAATEWAPRSIADALGEDEADVVISHDAEDQEMQENSVELQNEKASTSGSNFSRNGDKHERVPKKKRLVLTEEMEIKIKDLYEE FKENERCCHLIAESLDPTGGISPTQVFNKLKQLGLKASLRKRIRNTRREPDSTNADDHPSQGEKMTEEESLQRKQLTDTRKRAPAIGKDQEDKLRDLYEQ FKGERKCSHMIANALAPEGSFTAAQVSRKLKQLGLVVPRKKRSQTDDFIDDHETDDETLMSFKERSAKDARERKRSKISTPEATPAGEKSDVLGEEGTID EIDTPANADEQMTAADDVEEDGGMGDDSPVDEARGSELEDDDDGKLMEEELDDDDVDGKVMEDELEDDDVDASQVVDDGDVGGSVQQTRRKSRMIIDDDD DE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	1.4	0.9750
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	1.7	0.9818
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	3.9	0.9720
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	5.5	0.9631
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	5.7	0.9527
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	5.7	0.9614
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	6.0	0.9521
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	6.9	0.9664
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	7.1	0.9639
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	8.4	0.9621

Compare expression of checked genes

Lus10038831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.