Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21090 217 / 1e-71 ATMFDX2 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) AT4G05450 211 / 2e-69 ATMFDX1 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 1, mitochondrial ferredoxin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014947 [exp] 0 / 1 AT4G21090 216 / 8e-72 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182100 [exp] 237 / 1e-79 AT4G21090 260 / 2e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Potri.001G044700 [exp] 229 / 2e-76 AT4G21090 259 / 6e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Potri.002G239000 [exp] 40 / 0.0005 AT3G07480 236 / 5e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10038832 pacid=23150420 polypeptide=Lus10038832 locus=Lus10038832.g ID=Lus10038832.BGIv1.0 annot-version=v1.0 ATGGTTATGTCCAGGCTTTCTAGGATTGGAGTTGGAATCGCTAGAAGTTTCTCCAGAGGCAGATGTATTACCAGCGTATGCAGAACAGTGACTGTACCGA GACCTTATGGCCAGTGTTTGCAACGTCAGCAGCTTGAACCACATCATGGTAAGTTGGCCGAGGCTTCCATCTTCCAGAAGTATCACGGTTTTTGCACAGG AGGTCCTAGTGAAGACAAGCAAACGATATCCGTAACTTTTGTCGACAAAGATGGGGAGGAAGCAGTTATCAAGGTCCCGGTGGGAATGTCGATGTTGGAA GCTGCTCACGAAAATGATATAGAGCTAGAAGGCAAGAATCCTCGGCTTATTACAGGAGCGTGTGAAGGCTCTCTGGCCTGTTCTACGTGTCACCTGATAG TGATGGACGTCGAATACTACAACAAGCTAGAGGACCCGACAGACGAGGAGAACGACATGCTCGATTTGGCATTCGGGCTAACAGAGACTTCTCGTCTAGG CTGCCAAGTCATCGCGAAGCCCGAACTCGATGGAGTGCGAGTAATCATTCCAAAGCCAACACTTTCTGCAGCTACTGTAGTTAGTTTCTCCATATTTGAC CGAGTCAATCTGAGTTGCCGATCAATCGCGAAGCCTAACCTCGGCCTGAGTGCGAAATTTTCGCAGTCGGTGGTGGACTTGTATCAATCAGAGTAG
AA sequence Show only first row Show all	>Lus10038832 pacid=23150420 polypeptide=Lus10038832 locus=Lus10038832.g ID=Lus10038832.BGIv1.0 annot-version=v1.0 MVMSRLSRIGVGIARSFSRGRCITSVCRTVTVPRPYGQCLQRQQLEPHHGKLAEASIFQKYHGFCTGGPSEDKQTISVTFVDKDGEEAVIKVPVGMSMLE AAHENDIELEGKNPRLITGACEGSLACSTCHLIVMDVEYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGVRVIIPKPTLSAATVVSFSIFD RVNLSCRSIAKPNLGLSAKFSQSVVDLYQSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10038832 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10032992 [exp]	13.2	0.8385
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	16.0	0.8206
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	18.7	0.8346
AT2G01640			unknown protein		Lus10002816 [exp]	18.8	0.7977
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10022252 [exp]	18.8	0.7988
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	26.6	0.7792
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10038496 [exp]	37.1	0.7751
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	40.6	0.7962
AT5G27700			Ribosomal protein S21e (.1)		Lus10031494 [exp]	42.7	0.7806
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Lus10028525 [exp]	43.0	0.7580

Compare expression of checked genes

Lus10038832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.