Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41600 301 / 7e-104 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT2G46170 300 / 2e-103 Reticulon family protein (.1.2) AT4G11220 300 / 6e-103 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT4G23630 300 / 8e-103 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 298 / 1e-102 RTNLB3 Reticulan like protein B3 (.1.2) AT3G61560 271 / 1e-91 Reticulon family protein (.1.2) AT3G10260 223 / 6e-73 Reticulon family protein (.1.2.3) AT4G01230 199 / 1e-63 Reticulon family protein (.1) AT3G18260 191 / 8e-61 Reticulon family protein (.1) AT3G10915 134 / 9e-39 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014948 [exp] 445 / 1e-160 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027548 [exp] 403 / 9e-144 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 399 / 2e-142 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10039307 [exp] 390 / 7e-139 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 301 / 2e-103 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10036405 [exp] 290 / 2e-99 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10028753 [exp] 310 / 3e-99 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10041080 [exp] 288 / 2e-98 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10017533 [exp] 283 / 2e-96 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035600 [exp] 322 / 6e-112 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 322 / 6e-112 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 318 / 2e-110 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 305 / 2e-105 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 298 / 9e-103 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 287 / 2e-98 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 232 / 1e-76 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 226 / 2e-74 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 202 / 1e-64 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.015G044300 [exp] 184 / 5e-58 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10038833 pacid=23150456 polypeptide=Lus10038833 locus=Lus10038833.g ID=Lus10038833.BGIv1.0 annot-version=v1.0 ATGGCCGACCACGATTCCCTCGTAGAGAAGATAACCGAGAAGATCCACGGTCACCACGACGACGGATCTTCCTCCTCCTCTTCGTCCTCCGACTCCGATG ACGACAACAAGCCTTCCAAAGTCGAGGCCGTCAAATCCAAGATTTATCGCCTCTTCGGCCGTAACAGGCCCGTCCACAAGGTCCTAGGCGGCGGAAAACC TGCTGATGTTCTTCTATGGAGGAACAAGAAAGTTTCAGGGGCAGTGATCGGAGTAGCAACCGCGATATGGGTTCTATTCGAATTGATGGAATACCATGTG ATCACTCTGGTTTGCCATCTCTCGATCCTTTCGCTGGCTATCCTCTTCCTGTGGTCCAACGCCTCGACCTTCATAAATAGATCGCCACCTCAAATCCCTG AAGTTGTGATTCCTGAGAAGTGCATCCATGAAGTTGCCTCGGGATTGAGATACGAATTCAACCGGGGATGCACAGTTCTTCGCGAGATTGCATCCGGGAG GGATATTAAGAAGTTTGTGATCGTGATTGCTGGTTTGTGGTTTATATCCATCATTGGTAGCTGCTGCAACTTCTTGACACTGTTCTATATAGTGTTCGTG TTGCTGCACACTCTGCCTGTGCTGTACGAGAAGTACGACGACAAGGTCGATGCATTTGCGGAGAAGGCGATGATTAAGCTGAAGAAGGAGTATGAAGTAT TTGAGGCCAACGTTTTGAGTAAGATTCCTAAAGGTCCATTGAACAAGAAGAAGGATTAG
AA sequence Show only first row Show all	>Lus10038833 pacid=23150456 polypeptide=Lus10038833 locus=Lus10038833.g ID=Lus10038833.BGIv1.0 annot-version=v1.0 MADHDSLVEKITEKIHGHHDDGSSSSSSSSDSDDDNKPSKVEAVKSKIYRLFGRNRPVHKVLGGGKPADVLLWRNKKVSGAVIGVATAIWVLFELMEYHV ITLVCHLSILSLAILFLWSNASTFINRSPPQIPEVVIPEKCIHEVASGLRYEFNRGCTVLREIASGRDIKKFVIVIAGLWFISIIGSCCNFLTLFYIVFV LLHTLPVLYEKYDDKVDAFAEKAMIKLKKEYEVFEANVLSKIPKGPLNKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	0	1
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	4.6	0.8661
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	4.9	0.8496
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	5.1	0.8613
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	7.5	0.8324
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	9.2	0.8536
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	9.2	0.8352
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	9.5	0.8247
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	10.7	0.8464
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	11.2	0.8337
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	17.2	0.8303

Compare expression of checked genes

Lus10038833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.