Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52840 264 / 9e-92 NADH-ubiquinone oxidoreductase-related (.1) AT4G28005 105 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014951 [exp] 333 / 4e-119 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10027539 [exp] 308 / 3e-109 AT5G52840 275 / 3e-96 NADH-ubiquinone oxidoreductase-related (.1) Lus10039296 [exp] 307 / 9e-109 AT5G52840 271 / 1e-94 NADH-ubiquinone oxidoreductase-related (.1) Lus10043440 [exp] 189 / 3e-60 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071900 [exp] 278 / 3e-97 AT5G52840 265 / 5e-92 NADH-ubiquinone oxidoreductase-related (.1) Potri.017G149100 [exp] 253 / 2e-87 AT5G52840 250 / 3e-86 NADH-ubiquinone oxidoreductase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04716 [flax] [poplar] ETC_C1_NDUFA5 ETC complex I subunit conserved region
Representative CDS sequence Show only first row Show all	>Lus10038835 pacid=23150715 polypeptide=Lus10038835 locus=Lus10038835.g ID=Lus10038835.BGIv1.0 annot-version=v1.0 ATGTTCCTCCGGGCAATTGCGCGGCCGTTAATGGCCAAGGTGAAGGAGACGACAGGGATCGTCGGCCTCGACGTCGTCCCCAACGCCAGGGAAGTGCTGA TCGGACTCTACACCAAAACCCTAAACGAGATTGAGGCCGTGCCTCGGGACGAAGGTTACAGGAAGGCGGTGGAGAGCTTCACCAAGCACAGGATGAAGGT CTGCCAAGAGGAGACGGATTGGGAGGCGATCGAGAAGAAGCTCGGGTGTGGCCAGGTGGAGGAGCTCATCGAGGAGGCCCAGGACGAGCTGAAGCTCATC GCCAAAATGATCGAGTGGGATCCCTGGGGTGTTCCAGACGACTACGAATGCGAGATAGTGGAGAACGACGCTCCAGTTCCTAAGCATGTTCCTCTACATC GACCGGGTCCCCTCCCCACAGAGTTCTACAGTACGCTCGAAACTCTGCAATCGGATTCTAAGGAACCTCCTGCTGTCGCCTCCGGTGAGTCGAAGGCTGT GCAGTAG
AA sequence Show only first row Show all	>Lus10038835 pacid=23150715 polypeptide=Lus10038835 locus=Lus10038835.g ID=Lus10038835.BGIv1.0 annot-version=v1.0 MFLRAIARPLMAKVKETTGIVGLDVVPNAREVLIGLYTKTLNEIEAVPRDEGYRKAVESFTKHRMKVCQEETDWEAIEKKLGCGQVEELIEEAQDELKLI AKMIEWDPWGVPDDYECEIVENDAPVPKHVPLHRPGPLPTEFYSTLETLQSDSKEPPAVASGESKAVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10038835 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	2.6	0.8770
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	5.3	0.8743
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	6.7	0.8432
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	10.4	0.8577
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	10.8	0.8462
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	11.0	0.8667
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	12.4	0.8676
AT4G00530			unknown protein		Lus10037854 [exp]	14.5	0.8357
AT1G26750			unknown protein		Lus10016383 [exp]	15.5	0.8232
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Lus10025889 [exp]	15.7	0.8585

Compare expression of checked genes

Lus10038835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.