Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24060 201 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G49140 187 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G59300 157 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G21200 42 / 0.0007 PGR7 proton gradient regulation 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014952 [exp] 650 / 0 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10027532 [exp] 278 / 6e-89 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10039291 [exp] 274 / 2e-87 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148600 [exp] 256 / 1e-80 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 253 / 3e-79 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.014G151700 [exp] 140 / 3e-37 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G230700 [exp] 132 / 3e-34 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038836 pacid=23150510 polypeptide=Lus10038836 locus=Lus10038836.g ID=Lus10038836.BGIv1.0 annot-version=v1.0 ATGGCGATGATGATCGAGCCAGCTGCCGCCGGATTCCGTTCCTTCGCCGCTTCAGCTTATTATCGCGGAGCAACCGCGGAGATCGGCACACTAAGCGGCA ACACTCGCCGGATGCTTCGTACGGCTGGCTTCGATCTGCTGTGGAAGATATCTCATATATCGAGAGCTGGTTCTGTATTTAAGAGAAATGTAGTAGTAAA GAGTGCGATTCAAGCATCGGCTGGCTCGGATCATTCTGAGGAGAATGGTAAAGTGCAATGCCATTCATTAGAAGAGGCTGCTGAATCAGGCTCCGACACC TGTGGAGAACCTGCTCGGCTTACAGCTGAAGAGACTTGTAGGACTATCGTTGAGGTGAACAGCAAAGCTACTCTGATGCTGACTGACATGTCTAATGAAG AAATTATCTGGCCAGACATGCCGTATGTGACTGATGAATATGGAAATGTTTATCTCCAGGTGAAGAATGATGACGAAATACTGCAGCAACTTACATCAGA GAACAACTTTGTGGCCGTGGTAACTGTTCTTGAAGACGAAAGAGACGATGAGGATGAAGATGAGGAAGATTACGACGATGGAGACTGGAACGAATCCGAC ACCATGGATTCTCATCCAATGTATTTTGCCAAAAAGCTAACACAGATTGCGTCAGACGATCCAATAGATTGGATGAAGCAGCCCCCAACCGGTTTGGCCA TGCAAGGCGTTCTCAGACCTGCAACCCTCGAAGAACACACCGACATCCAGAGGCATATTTCGAGTCAAGAAACCGAACCCGCATCATCTGACAATGGTTC AGTTCAAGCAGAAGATGAGACTTCATATTACAAGCTCGAAGCAGAAAAAATCCAGCTGATTTCTGCTGATGGACATCAGACTCTAGAGGGCCTGATCTTC TCGTCACATACCACAGTCGAACCGGAAGATTACAGGAAATCGAAACCTGATGTCATTGCATGCTCTGCTGGAAAAATCATATCCCGTCTCAAAGATGGCG GTGAAGAAGTCGTGGAAGCTTTGATATCCTTGTGCTTGAGATGTAAAGGCATCCGAGTGGAGGAAGCTGAAGCGATAAGCGTGGATTCCCTCGGGTTCGA TATAAGGGTTTGCTCAGCAACTCAAGTCCAGACGTTGCGGTTCACATTTAAATCACGGGCCATGTCGGAAGACGGCGCAGAGAGACAACTCAATGAATTA CTGTTCCCAAGAAGCAGAGTAGACATCAAGTAG
AA sequence Show only first row Show all	>Lus10038836 pacid=23150510 polypeptide=Lus10038836 locus=Lus10038836.g ID=Lus10038836.BGIv1.0 annot-version=v1.0 MAMMIEPAAAGFRSFAASAYYRGATAEIGTLSGNTRRMLRTAGFDLLWKISHISRAGSVFKRNVVVKSAIQASAGSDHSEENGKVQCHSLEEAAESGSDT CGEPARLTAEETCRTIVEVNSKATLMLTDMSNEEIIWPDMPYVTDEYGNVYLQVKNDDEILQQLTSENNFVAVVTVLEDERDDEDEDEEDYDDGDWNESD TMDSHPMYFAKKLTQIASDDPIDWMKQPPTGLAMQGVLRPATLEEHTDIQRHISSQETEPASSDNGSVQAEDETSYYKLEAEKIQLISADGHQTLEGLIF SSHTTVEPEDYRKSKPDVIACSAGKIISRLKDGGEEVVEALISLCLRCKGIRVEEAEAISVDSLGFDIRVCSATQVQTLRFTFKSRAMSEDGAERQLNEL LFPRSRVDIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49140			Pentatricopeptide repeat (PPR)...		Lus10038836 [exp]	0	1
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	5.3	0.9193
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	15.6	0.9056
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	16.1	0.9045
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	17.0	0.9044
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	22.0	0.8939
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	23.5	0.8720
AT3G61610			Galactose mutarotase-like supe...		Lus10000254 [exp]	23.7	0.7872
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	27.7	0.8918
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	29.5	0.8506
AT1G14270			CAAX amino terminal protease f...		Lus10036748 [exp]	31.9	0.8643

Compare expression of checked genes

Lus10038836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.