Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52800 646 / 0 DNA primases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014953 [exp] 1129 / 0 AT5G52800 680 / 0.0 DNA primases (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148000 [exp] 738 / 0 AT5G52800 656 / 0.0 DNA primases (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03121 [flax] [poplar] Herpes_UL52 Herpesviridae UL52/UL70 DNA primase
Representative CDS sequence Show only first row Show all	>Lus10038837 pacid=23150391 polypeptide=Lus10038837 locus=Lus10038837.g ID=Lus10038837.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGAAGTCGCCGGAGGCCATGGACGACGTGGATCGCTTATTCCAGTGCTTCAAGTGCGGAGTAGAACCTCCACAGTCTGCTGTGCGAGAGA GGAAACGGAGCAACAGCAAATCGAGGCGAGGGAGCGGAGTACTGCTTGATGCTTCATCGATCTGCAGAAACACTCCGTCTCCTGGATCAGCTGAGCCTCG GAAGAAAATCGCCACGGATGCACTGATCTCGGAAGCAGGTTGTTCAACATCCAAAGCCGATAAGTTAAGATGTGGCAAGATTTCTCCAGTAGTGTTTTAC GGATCTCCTAATGGTGTGCCTCCTAAAAGACCAATCAGTTTGCTGCGACTGTTGAGGGAAATACGAGTCGATCTTTCAGAACAAGGAAAAGAGAACTTGA GGAAGGAGGTATGGGCTACATTTCCAAGACAGAATGAAGCTATGAACTTTGCGAAAGAGCACAACAACGTCCGTGTTTTCAGCTATCAAGATCATATCCA TGGGCAGAGAAGGTTCCTGGTTTCGACATACCACGAGTTCTGGAAAAGGTATCAAAACATGGGCTCGAAGTTTCGACATCATTACGAAGTAATTCAAGAG GGGTTACCATGCCATCTGTACTTCGATTTGGAGTTCAACAAGAAAGGCAACACACAGAAGAATGGGGACGAAATGGTGGATCTCCTGATATCAGTCATTT TTAAATTATTGAATGAGAAGTATTCAATAGAAGGAAGTGATGATTGGATTGTGGAGCTTGATTCTTCTACTACAGAGAAGTTCTCACGTCATCTAATCCT CCGCATACCAAAGGCTGCCTTTAAGGACAATTCCCATGTTGGTTCGTTTGTTTCAGAGGTATGTTCCCGGATGGCTAGTTTAAAACACAAGGACGAAAGA TACAACACATTATATATCAGAAAGGACTCAAACTCTACTGAACCTCCAACCCATCTGTTCATCGACACTGCCGTTTACACTAGAAACCGTTGCTTTCGCC TGGCTCTTTCGTCGAAGGCAGGCAAAACCTCGTTCCTTGTACCCACAGAGCGCTTCAAATGTAAAACCATGGTATGTTGGTACGCTACTCTTAACTCCAG TCACTACATAGCAGTCCTTGTCGTATCAGGAAAAGCTTCGATTTCATCACGTGGCCTATTCTCTTGTGTGTTTGGAAAACAGTGTGAAGAAGACATGTTC ATGGCTTCCTTGATCTGCAACGTCGACAGCGACACCGACAGGCTGCTCGTCTGCAAAATGGATATGGAGTGTGTTAAGAAGTTGCAGTTTGATACTGAGG TGAACTATAATGTCAACGGGTACAGTAGGCCTCGAGAACTGTCAATGACAACGAATGGAACTTCTCGAGACGCTGCGATGACATCTTCCACTGAAGGGAA GTCGCCACTCCCATCTTTGGACAAATTTGTGGAGTGCATTGCCTCCACCGGAAGTACAACAGGGAAAATACGAAGCTGGTATTGGTTCTCAGAGGACGGA TTGATGGTGTACAGCATGTCAAGGAATCGATACTGTGAACGAATCGGCAGAGAGCATCAAAGCAATCACGTTATCTACGTGGTTGATTTGAGATGGGGCT TCTACTACCAAAAATGCCACGATCCAGATTGCCAAGGCTACAAGTCTCCCTTTCGTCCAGTACCGATTGACATGATTCCGAAGCATCCACCTAGCCGCGA CATCAAACAGTTGGATCGGATGAATGATTCTGTTGAATACCAACTATTCAACAGTAATGATGATGGAGATGGGCATCAGAAGGAAGGATGCGGCAGTAGT GGTAAAGATTCTTGGTGGCTAGAAGCTATGAGAGTTGCTGACGACATCGAATTGAAAGGGAGCGACGGACTACTTACGCAAATGGTTAGCCGTCCTCAAC TTCTTAACCAAAATGAGATTGACGAGGACGATGAGATGTGGTGGGTAGCTGTTGAAAGAAGTGTGTCTCAAGCCGAGTTAATGCACACTTCACTTTAA
AA sequence Show only first row Show all	>Lus10038837 pacid=23150391 polypeptide=Lus10038837 locus=Lus10038837.g ID=Lus10038837.BGIv1.0 annot-version=v1.0 MADQKSPEAMDDVDRLFQCFKCGVEPPQSAVRERKRSNSKSRRGSGVLLDASSICRNTPSPGSAEPRKKIATDALISEAGCSTSKADKLRCGKISPVVFY GSPNGVPPKRPISLLRLLREIRVDLSEQGKENLRKEVWATFPRQNEAMNFAKEHNNVRVFSYQDHIHGQRRFLVSTYHEFWKRYQNMGSKFRHHYEVIQE GLPCHLYFDLEFNKKGNTQKNGDEMVDLLISVIFKLLNEKYSIEGSDDWIVELDSSTTEKFSRHLILRIPKAAFKDNSHVGSFVSEVCSRMASLKHKDER YNTLYIRKDSNSTEPPTHLFIDTAVYTRNRCFRLALSSKAGKTSFLVPTERFKCKTMVCWYATLNSSHYIAVLVVSGKASISSRGLFSCVFGKQCEEDMF MASLICNVDSDTDRLLVCKMDMECVKKLQFDTEVNYNVNGYSRPRELSMTTNGTSRDAAMTSSTEGKSPLPSLDKFVECIASTGSTTGKIRSWYWFSEDG LMVYSMSRNRYCERIGREHQSNHVIYVVDLRWGFYYQKCHDPDCQGYKSPFRPVPIDMIPKHPPSRDIKQLDRMNDSVEYQLFNSNDDGDGHQKEGCGSS GKDSWWLEAMRVADDIELKGSDGLLTQMVSRPQLLNQNEIDEDDEMWWVAVERSVSQAELMHTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	0	1
AT1G69400			Transducin/WD40 repeat-like su...		Lus10014343 [exp]	1.4	0.9338
AT1G75150			unknown protein		Lus10010814 [exp]	2.0	0.9400
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	4.9	0.9198
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	4.9	0.9325
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006082 [exp]	5.0	0.8972
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	5.3	0.9305
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	6.9	0.9219
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	7.5	0.9213
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	7.7	0.9091
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	7.7	0.9236

Compare expression of checked genes

Lus10038837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.