Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52530 54 / 2e-06 dentin sialophosphoprotein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014955 [exp] 1830 / 0 AT5G52530 49 / 1e-05 dentin sialophosphoprotein-related (.1.2.3) Lus10014954 [exp] 778 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079000 [exp] 214 / 6e-56 AT5G52530 122 / 4e-28 dentin sialophosphoprotein-related (.1.2.3) Potri.017G142600 [exp] 184 / 2e-46 AT5G52530 84 / 3e-16 dentin sialophosphoprotein-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038838 pacid=23150268 polypeptide=Lus10038838 locus=Lus10038838.g ID=Lus10038838.BGIv1.0 annot-version=v1.0 ATGTCAAGTACGGAGCAAGGAGCGATTGTGTCATGCGAGACTTCCAGTAGCAAATCGTCTGTGAGCGGGAAAACAATTATAGGGTCTCTAGCCGGGATAA GTAAAGAGGGTTTGGAACTCGAGAATTTTATAAATCCTGAGTTAACTTGGAAGTCTATAGCTAAAGGATATAGGAGCTCTTCAAGGCGGGCTAGGAGGCA TGCTCTCAGAAATTTTGTTGCCGGGAAGAAGCTATCAGTGCAAGGATCAATGGAGGTGGAAGAGGGAACAACTTCAGATACAGAGATGCATGGGGTGGCC ATTCTTGGGCGACGTTTTAGTGACAAAATATGGGATATTCCGTTGAAGAAACGTAGGCTTATGCTTTGTTCTCCCTCGCCACCACCTACATCCCATCAAG AAGCCTCAAAACTCGACTCTTTAAGTGAGAAGCTATCGAAGGCAGGTGAAGATTCTGCAAAGGTTGATACTCAACAGAGGAGTGAAGACTTCTCAGGTTT GGAGATACTTGCAGTTGTAGAGACCGCCCAAGTTAATAATGGTAGTTTCAGGTCATCAACTGGGGACAGAATAGGCTCATCTCCTGAAGACAATGCTTGT GAAGCAAAGAGCAAGGGAGCATCTTTGAGTAATGGGAATGTTGAGGGAAGTGGACAGAAGAAACCCGAAGAGGTTACGGAAGGCAGCAGCGAAACAGATG TATCAGAGACATCAACAGAGCAGAAGGAGCTAGAGCAAACAGGGGTTATTTTGCCGGAATCTCCTATAAAAAAGGAAATTGGATTTGGGGAGGGATCTGG ATCTGTAAAAGATACTAGACTGCTCTGGGACCTGAATGTTCCTGCAGATGCCTGGGAAACCTCTAGTCAATCCTGTGCGATCGGCCTCCATGTAAATGCA TCAACTTGTTTGCTTTCAGGAACAGAGGAAAGGATGGAGGTTCTAAATAATTCTCTGGTAAATTTGGAATGTAAGAAAACTCAGAACTCCGTTGTGGACA GTGTGTCCAAAGATGCCAAGGAGCCTTTCACCGTCTCTGTAGATACAAAAGAGTCGTTGCCTGGGAGTCATGAAGCTAACAATAGACAGGATGGATTCGG CAACTCTGCCGAGCTTGACAGGGATAGGGAGGGCCGTGTCTGTTCAGTTCCAGACGCGAAGGATTCCCGTAAGATTGCTGGCTGTTCTCTTGATCATTTG GATCGTGCTAAGATTTCTGCGGATGATGGGAATGCTTGCCCTAAAATCAAAGGGGTAACTAAAGCTCTTTCTTCTGATGATACACCTGCAAAAGTGTCGT CTATGGGAGATGTTTTGGATGATAGTTATGGCTCTGATGTTTATCAAACGGAGAAGGTGGATATGAACAGCACTGAAAGAGGTGAAGAGCTTTTGGATGG TTATGATTCTCAGTTCGAGGACGGAGAGTTGAGAGAAGCTGATGCACCTTGCTATTCAGATAAAAATGTAGGGGAGGACGGGGCAGTCAAGCAAGTCGAC TATGGCTCCGGATCTGATGATGGTATCCTTGGGTTGATGCCAATGAAGGAAGCGGAAGCTGAAAGATTGTCAACACCAGTATCTTGTGAAACCACCAGAA AAACTGAACTTAGTAATGCCGAAATGGGTACTGCAAGAGACGATTCCGCGAGCTTGGAAAGCAGTGATAAAGGTTTGCCTCCTGGTTTTGTTGGAATAGG GAGCTGTCAAGTAGATGAGTCTGCATCATTTATCGATGGGCAAGTCGACTATGGATCCGAATGCGATGAGGGTCTCCTCGAGTTGATGCAAGTGAAGGAA GTGGAAGCGGAAAGATTATCAACCCCAGGATCTTGTCAAACCACCAGGAAAACTGAACTTAGTAATTGCGAAATGGGCAAAAGAGAGGATTCGGCGAGCA CGAAAAGCAGTGATAAAGGTTTGCCTGCTGGTTTTGTTGGAATAGGCAGCAATCAGGTGGACGAGTCCGACTCATTTATCAATGGGCCACCAGAGGCCAT GTGGAGGAACAGGTCAGAAAATTGTCGCAACTTATTCCCACGAGATGAAGCTGATGTTCGTCCTAAACGATACTTTGGGAGGGACAGACATTTTGATCGT TCTACTGCTAACTGGAACTTGGAGCGACGTTACTCGCCGAATCGGGCTGCATATACTTATGATCGTTCTAGGCCAAAAGGCTTTGTCGAAGGAAGAAGAT TTATGATGCCATCGGACCGGATGAATTCCCAGACCCAACGGTTTGTTGGATTTGAGAATCGGGTCGGTAGGCAATTTGCAAACTCCCGTGAACACATAAT GAGACGGCACTCTCCTAGTTTTAGGGGAGGGGATTCTTATGGCCTGAATCCGAGAATGTTTCCGCCGCGAGATATGAGTCCAGAAGCAAGGAATCAGTTT CGAAGATTTCCGAACTCTAGGGGCAGCATCAGGGAAGAAGAAGAGTTTATGAATTCCTTCCCAGAGGATGCTACTAATCACTATTCTGGCTACAACGCTT TTTCGGAAAGAGACAGAAGTATTTCCCCTGGATTTGAGAATCGAGTCGGTAGGCAATTTCCAAACTCCCGTGAACACATAATGAGAAGGCGGTCACCTGG TTTTATAGGCAAGGATTCCTATGGCCTGAATTCGAGGATGTTTCCGCAGCGAGAGATGTCTCCACAAGAAAGAAATCAGTTTCGGAGCTTTAGGGGCAGC ATCAGGGATGAAGAGTTTAGGAATTCCTTCCCAGAGGATGGCTACAACGGTTTATTGAAAAGAGAGAGAAGTATTTCCCCGCAACCGCACGGACGCCCCC AGTATTCAAGGTCGAGATCAAGGTCAAGGATACGATCGCCACCAAATTACTTGCAGCAAAGGGAACAACGGGATGTTGATGGTTCATTGATGCGCAGTAG GTCCCCTGGGTCGAACAGAGGGGTGAGAATTCCTTTTCAGAAGCGTTTCACAGCTAGATACGAAGACCGTGACCAACCGAGACGTCAATTTCAACCTAAC CACATGAGGCCGTTCGATGATCGTAGTGGTGGTGGCTTTGTCGATTTCAGAGCAAGGAAATCGCCTGTAAGGATGTACCACCAACGTCAGATGCAGCAGG GTAACAACAGATTCGATTCGATTCGGGGAAACAACAGCGATGAATTCAGACCGGTTATGCAACAACAGCCCGGAGACTTCCACGATGCTCACCACAGGTT TGAGATGTCTCGAAACAATGCAAATGCTGCAGCAGGGGAGGAAGCTCCCCGTAAGGCGTTTGAGATTAGGTTCTCGACTTGCACCGTGGCTAAGCCATCT TCACTCATGTCAAGTACGAAGCAAGGAGGGATTGTGTCAAGCAAGCCTTCCAGTAGCAAATCGTCTGTGGCTGGGAAACCACTTATAGGGTCTGTAGGCA GGATGCGTAAAGTGGGTTTGGAACTCGAGAATTTTATTAATCCCGAGTTAACTTGGAAGTCTATAGCTAAAGGATATAGGAGTTCTTCAAGGCGGGCTAG GAGGCATGCTCTCAGAAATTTTGTTGCCGGGGAGAAGCTACCAGTGCAAGGATCAATGGAGATCGAAGAGGGAACAGCTTCAGATACAGAGAAGCATGGG GTGGCCATTCTTGGGCGACGTTTTAGTGACAAAATAGCGGATATTCCGTTGAAGAAACGTAGGGTTATGCTTTGTACTCCCTCGCCATCACCTAGATCTC ATCAAGAAGCCTCTAAACTTGGCTCTTACAGTGAGAAGCCATCGAAGGCAGGTGAAGATTCTGCAAAGGTTGATACTCAACAGAAGAGTGAAGACTTCTC CGGTTTGGAGATACTTGCAGCTGTAGTGACCGGCGAAGTTGATAATGGTAATTTGAGGTCAGTTGTGCTATCAACTAGAGACAGAATAGGCTCATCTCCT AAAGACAATGCTTGTGAAGGAAAGTGCGGGGGATCATCTGTGCTGGAGCAAACCGGAGCTGTTTTGCTGAAATCTCCTATAAAAAAGGAAATTGGATTTG GTGAGGGATCTGGATCTGTAAAAGATACTAGACTGCTCTGGGATCTGAATGTTTCTGTAGATGCCTGGGAAAACTCTCGTCACTCCTGTGCAATGCGCGG CCTTGTAAATGCATCAACTTGTTTGCTTTCAGGAACAGAGGAAAGGGTGGAGGTTCTGAATAATTCTGAGGTAAATGTGGAATGTAAGAAAACTCAGAAC TCCGTTGTGGACAGCGTGTCCGAAGATGCCAAGGAGCCTTTCACTGTCTCTGCAGATACAAAAGAGTTGTTGCCTGAGATTCATGAAGCTAGCAATAGAC AGGGTGGATATGATAACTCTGCAGAGCTTGACAGGGACAGTAAGGGCCTTGTCTGTTCAGTTGCAGACGTAAAGGATTCCTGTAAGATTGCTGGCGCTAT TTGTTCTCTTGATCATTTGGATCCTGCTAAGATTTCTGCGGATGATAGGATTTCTTACCCTACAATCAGAGGGGTAATCAAAGCTCTTTCTTCTGATAGT ACACCTGCAAACGTTTTGGCTATGGGAGATGGTTCAGATGATAGTTATGGCTCTGATGTTTATCAAACGGAAAAGGTGGATATGAACAGCACTGAGAGAG GTGATGAGCTTTTGGGTGGTTATGATTCTCAGTTCGAGGATGGAGAGTTGAGAGAAGCTGACACACCTTACTATTCGGATAAAAATGGAGGCGAGGACGG GGAAGTTGAGCAAGTAGACTATGGCTCCGAATGCGATGAAGGTCTCCTCGGGTTGATGCAAGTGAAGGAAGTGGAAGCTGAAAGAGTGTCAAACCCGGGA TCTTGTGAAACCACCAGAAAAACTGAACTTAGTAATGGCGAAATGGGTGCTGAAATGGGTACTGCAAGAGATGATTCTGCGAGCTTGAAAAGCAGTGATA AAGGTTTGTCCACTGGTTTTGTTGCAATAGGCGGCAATCAGATGGACGACTCTGCATCATTTATTGATGGGCCACCGGAGGCCATGTGGAGGAACGATTC TTATTCCAGGTCAGAAAATTGTCGCAAGTTTTTCCCACGAGATGAATCCGATGGTCGTCCCAAAAGGTACTTTGGAAGGGACAACAGACATTTTGCGGAC ATGCGTGGCAGAAGTCCTGGTCGTTCTACTGCTAACTGGAACTTAGACCGACGTTACTTGCCGAATCGGGCTGCACATACTTTGGATCGTCCTAGGCCAA AAGGCTTTGTTGAAGGAAGAAGATATATGATGTCATCTGACCGGATGGATTCCCATGGATTTGAGAATCGAGCCGGTAGGCAATTTGCAAATTCCCGTGA ACACACAATGAGAAGGCGGTCACCTGGTTTTAGAGGAGAGGATTCTTATGGCAGTAATTCGAGGATGTTTCCGCTGCGAGAGATGAGTCCGCAAGCAAGG AATCAGTTCCGAAGATTTCCGAACTATAGGGGCAGCATGAGGGAAGAAGAGTTCAGGAATTCTTTCACAGAGGATGCTGCTAATCACTATTCTGGCTACA ACGGTTTATCGAAAAGAGACAGAAGTATTTCTCCCCAACCGCATGGACGCCCCCAGTATTCAAGGTCAAGGATACGGTCTCCGCCAAATTACTTACAGCA AAGGGAACAACAAGATGTTGATGGCTCGTTGATGCGGAGTAGGTCCCCTGGGCAGAACAGAGGAGTGAGAATTCCTTTTCAGAAGCGTTTCACAGCTAGA TATGAAGACCGTGACTTGTTCACTTCTCCAACGAGACGTCAATTTCCACCTAGCCACATGAGGCCGTTCGATGATCGTAGCAGTGGTGGCTCTGTCGATT TCAGAGGAAGGAAATCGCCTGTCAGGATTTACCACCATCGTCAGCAGCTGCACGGGAACAACAGATTCGATTCGTTTCGAGGAAACAACAACGACGATTT CAGACCGGTTATGCAACATCCCCGAGACTTTCACGACGGTCGCCACAGGTTTGACATTTCTCGAAACAATGCAGCAGCAGGAAACGAAGCTCCCCCCGCA AGGCCTCCTTTGAGGTGTAGCCTCGAGGACTCGGCTGCGACCAATAATGCTAATAAGCTAGACGAGAGTAGCAATGTCGATGCAGCAGCTGCTGCTGCGA CAACAGTAGCAAGCAATGCTTAA
AA sequence Show only first row Show all	>Lus10038838 pacid=23150268 polypeptide=Lus10038838 locus=Lus10038838.g ID=Lus10038838.BGIv1.0 annot-version=v1.0 MSSTEQGAIVSCETSSSKSSVSGKTIIGSLAGISKEGLELENFINPELTWKSIAKGYRSSSRRARRHALRNFVAGKKLSVQGSMEVEEGTTSDTEMHGVA ILGRRFSDKIWDIPLKKRRLMLCSPSPPPTSHQEASKLDSLSEKLSKAGEDSAKVDTQQRSEDFSGLEILAVVETAQVNNGSFRSSTGDRIGSSPEDNAC EAKSKGASLSNGNVEGSGQKKPEEVTEGSSETDVSETSTEQKELEQTGVILPESPIKKEIGFGEGSGSVKDTRLLWDLNVPADAWETSSQSCAIGLHVNA STCLLSGTEERMEVLNNSLVNLECKKTQNSVVDSVSKDAKEPFTVSVDTKESLPGSHEANNRQDGFGNSAELDRDREGRVCSVPDAKDSRKIAGCSLDHL DRAKISADDGNACPKIKGVTKALSSDDTPAKVSSMGDVLDDSYGSDVYQTEKVDMNSTERGEELLDGYDSQFEDGELREADAPCYSDKNVGEDGAVKQVD YGSGSDDGILGLMPMKEAEAERLSTPVSCETTRKTELSNAEMGTARDDSASLESSDKGLPPGFVGIGSCQVDESASFIDGQVDYGSECDEGLLELMQVKE VEAERLSTPGSCQTTRKTELSNCEMGKREDSASTKSSDKGLPAGFVGIGSNQVDESDSFINGPPEAMWRNRSENCRNLFPRDEADVRPKRYFGRDRHFDR STANWNLERRYSPNRAAYTYDRSRPKGFVEGRRFMMPSDRMNSQTQRFVGFENRVGRQFANSREHIMRRHSPSFRGGDSYGLNPRMFPPRDMSPEARNQF RRFPNSRGSIREEEEFMNSFPEDATNHYSGYNAFSERDRSISPGFENRVGRQFPNSREHIMRRRSPGFIGKDSYGLNSRMFPQREMSPQERNQFRSFRGS IRDEEFRNSFPEDGYNGLLKRERSISPQPHGRPQYSRSRSRSRIRSPPNYLQQREQRDVDGSLMRSRSPGSNRGVRIPFQKRFTARYEDRDQPRRQFQPN HMRPFDDRSGGGFVDFRARKSPVRMYHQRQMQQGNNRFDSIRGNNSDEFRPVMQQQPGDFHDAHHRFEMSRNNANAAAGEEAPRKAFEIRFSTCTVAKPS SLMSSTKQGGIVSSKPSSSKSSVAGKPLIGSVGRMRKVGLELENFINPELTWKSIAKGYRSSSRRARRHALRNFVAGEKLPVQGSMEIEEGTASDTEKHG VAILGRRFSDKIADIPLKKRRVMLCTPSPSPRSHQEASKLGSYSEKPSKAGEDSAKVDTQQKSEDFSGLEILAAVVTGEVDNGNLRSVVLSTRDRIGSSP KDNACEGKCGGSSVLEQTGAVLLKSPIKKEIGFGEGSGSVKDTRLLWDLNVSVDAWENSRHSCAMRGLVNASTCLLSGTEERVEVLNNSEVNVECKKTQN SVVDSVSEDAKEPFTVSADTKELLPEIHEASNRQGGYDNSAELDRDSKGLVCSVADVKDSCKIAGAICSLDHLDPAKISADDRISYPTIRGVIKALSSDS TPANVLAMGDGSDDSYGSDVYQTEKVDMNSTERGDELLGGYDSQFEDGELREADTPYYSDKNGGEDGEVEQVDYGSECDEGLLGLMQVKEVEAERVSNPG SCETTRKTELSNGEMGAEMGTARDDSASLKSSDKGLSTGFVAIGGNQMDDSASFIDGPPEAMWRNDSYSRSENCRKFFPRDESDGRPKRYFGRDNRHFAD MRGRSPGRSTANWNLDRRYLPNRAAHTLDRPRPKGFVEGRRYMMSSDRMDSHGFENRAGRQFANSREHTMRRRSPGFRGEDSYGSNSRMFPLREMSPQAR NQFRRFPNYRGSMREEEFRNSFTEDAANHYSGYNGLSKRDRSISPQPHGRPQYSRSRIRSPPNYLQQREQQDVDGSLMRSRSPGQNRGVRIPFQKRFTAR YEDRDLFTSPTRRQFPPSHMRPFDDRSSGGSVDFRGRKSPVRIYHHRQQLHGNNRFDSFRGNNNDDFRPVMQHPRDFHDGRHRFDISRNNAAAGNEAPPA RPPLRCSLEDSAATNNANKLDESSNVDAAAAAATTVASNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	0	1
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	1.0	0.9110
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	1.4	0.9071
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	5.5	0.8763
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	5.7	0.8662
AT3G12010			unknown protein		Lus10017227 [exp]	7.5	0.8549
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	8.8	0.8407
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	9.8	0.8475
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	13.7	0.7819
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	17.0	0.8417
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	17.7	0.7963

Compare expression of checked genes

Lus10038838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.