Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13230 715 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 499 / 5e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 474 / 7e-160 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 473 / 6e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 468 / 2e-157 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 473 / 3e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 464 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 461 / 2e-155 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 466 / 2e-154 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 468 / 9e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014956 [exp] 761 / 0 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 512 / 7e-170 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 497 / 3e-166 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 481 / 1e-162 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 479 / 6e-162 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 478 / 1e-161 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 477 / 7e-161 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 474 / 2e-157 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 474 / 2e-156 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164900 [exp] 893 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 514 / 1e-170 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 503 / 7e-168 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 487 / 6e-165 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 491 / 5e-164 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 481 / 1e-163 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 483 / 2e-162 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 483 / 6e-162 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 487 / 9e-161 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 474 / 4e-158 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038839 pacid=23150295 polypeptide=Lus10038839 locus=Lus10038839.g ID=Lus10038839.BGIv1.0 annot-version=v1.0 ATGGTTTCGTGGACTGGGATGGTTGCTTGCTATGCGGAGAATGATTGTTTCCATGACTCTTTGCAAGTGTTCTCCGACATGAGGAGATTCGGGTTCAGGC CGAATCATTTCACGCTCGCAGCAGTGCTTAAGGCCTGTGTTGGTCTAGAGGCATTCAATTTGGGGAAAGGTCTACATGGTTGTACTTTGAAAACCGGTTA CGAGTCTAACCTTTTTGTAGCCATCGGGTTGCTTGACTTGTATCTGAAATTCGGACATGATGCTGATGATGCTTTAAGGGTGTTTGAGGAGATGCCTAGA GACGACGTTGTTTCATGGAGCTACATGATTGCTCGGCATGCTCAGAGTGGCAATGGTAAAGAGGCTTTGGAGCTGTTTCTCCAGATGAGACGACAGATGA CAATTGTGCCTAATCAGTATACATTCGCTAGTGTCCTGCAAGCTTGCGCGACTACAGAGGCTCTGGATTTCGGTAAGCAAGTTCATTCTCACGTGCTTAA ACTCGGGTTTCTCGAAGATGTGTTTATAACAAACGCTTTAATGGATGTTTACGCGAAATGCAGTCAAATAGAGAACTCTCTTACACTATTTCTAGACTCG TCAAAGAACATAAACGATGTCAGTTGGAATACTATGATTGTCGGTTTCGTGCACGCTGGTGATTTCGAGAAGGCATTGAGTTTCTTTAAAGATATGCTTG ATTGTCACCATGTCCAGGCCACTGAAGTCACGTACTCCAGCGGTCTTCGTGCTTGTGCTAGTCTAGCAGCATTGGAGCTAGGAACTCAGATTCATTGCTT GTCCGTGAAAACAACGTATGATGAGAACACAGTAGTCGGTAATGCTTTGATAGACATGTACGCAAAGTGTGGCGGAATCAAAGACGCTCGTGTAGTATTC GACAGTTTAAGCAAGAAAAACGACGAGGTTTCCTGGAATACTATGATATCAGGGTACTCTACACACGGCCTTGCTGAGGAAGCTCTCCGAGTTTTCGACT CGATGCGAGAAAGTGGGGTCACGCCTAATCAGATGACTTTAGTCGGGGTGCTATCAGCTTGCAGTAACAATGGATTGCTCGATAGAGGAGAAGCTTATTT CAACTCCATGATAGAGGATTACGGTATTAAGCCGTGTATGGAGCATTACTCTTGTATGGTATGGTTATTAGGAAGGTCAGGCCATCTAAACCGGGCTTTT AAGTTGATTCAAGAAATGCCGTTCGAGCCGAGTCTTATGGCTTGGCGTGCCTTACTCGGTTCGTGTGTCATCTACAACGACACCGAGCTAGGAAAGCTCT GTGCGGAGCACATTCTTAAGATCGAACCTGAAGACGAGTCTACTCACGTACTGCTGTCGAACATGTACGCGAGAACCAAAAGCTGGGGACATGTCGCTTC GGTTCGAAGAAGCATGAAAAGTAAAGGAGTCATCAAAGAGCCCGGGTTAAGCTGGATTGAGAACCAAGGGGTTGTTCATTATTTCACTGTGGATGACGTG TCACATCCCGACTTGAAACTAATGTACGGAATGCTGGAGTGGCTCAACATGAAAGCCAGGCGAGAGGGGTACAGCCCGGACCGTAACGTTGTTCTACGTG ACATCGAGGATGGTCGAAAGGAGCGGCATTTGTGGGTGCATAGTGAGAGACTGGCTCTGGCTTTCGGTCTAGTCCGAACGCCAGCGAGAAGAAGTCCGGT CCGGATTATAAAGAACCTTCGTATCTGTGCAGACTGCCATGCTGTTATGAAATTGATCTCCAAGATTGTGAAGCGTGACATTGTTGTAAGAGATATGAAT CGGTTCCATCACTTTGAAAATGGGACTTGCTCTTGTGGTGACTATTGGTGA
AA sequence Show only first row Show all	>Lus10038839 pacid=23150295 polypeptide=Lus10038839 locus=Lus10038839.g ID=Lus10038839.BGIv1.0 annot-version=v1.0 MVSWTGMVACYAENDCFHDSLQVFSDMRRFGFRPNHFTLAAVLKACVGLEAFNLGKGLHGCTLKTGYESNLFVAIGLLDLYLKFGHDADDALRVFEEMPR DDVVSWSYMIARHAQSGNGKEALELFLQMRRQMTIVPNQYTFASVLQACATTEALDFGKQVHSHVLKLGFLEDVFITNALMDVYAKCSQIENSLTLFLDS SKNINDVSWNTMIVGFVHAGDFEKALSFFKDMLDCHHVQATEVTYSSGLRACASLAALELGTQIHCLSVKTTYDENTVVGNALIDMYAKCGGIKDARVVF DSLSKKNDEVSWNTMISGYSTHGLAEEALRVFDSMRESGVTPNQMTLVGVLSACSNNGLLDRGEAYFNSMIEDYGIKPCMEHYSCMVWLLGRSGHLNRAF KLIQEMPFEPSLMAWRALLGSCVIYNDTELGKLCAEHILKIEPEDESTHVLLSNMYARTKSWGHVASVRRSMKSKGVIKEPGLSWIENQGVVHYFTVDDV SHPDLKLMYGMLEWLNMKARREGYSPDRNVVLRDIEDGRKERHLWVHSERLALAFGLVRTPARRSPVRIIKNLRICADCHAVMKLISKIVKRDIVVRDMN RFHHFENGTCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	1.7	0.8883
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	2.0	0.8811
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	2.8	0.8536
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	3.0	0.8582
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10036373 [exp]	3.2	0.8297
AT4G10620			P-loop containing nucleoside t...		Lus10016692 [exp]	6.0	0.8222
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	7.0	0.8364
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	8.9	0.8463
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	11.2	0.8255
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10005210 [exp]	12.0	0.7210

Compare expression of checked genes

Lus10038839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.