Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16380 62 / 2e-11 PAB6 poly(A) binding protein 6 (.1) AT5G03580 55 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 55 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G36660 56 / 2e-09 PAB7 poly(A) binding protein 7 (.1) AT1G71770 56 / 2e-09 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G73530 52 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 52 / 3e-08 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 52 / 5e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 51 / 1e-07 PAB3 poly(A) binding protein 3 (.1) AT5G64200 50 / 1e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014958 [exp] 293 / 2e-102 AT5G52545 55 / 2e-10 unknown protein Lus10031534 [exp] 54 / 2e-09 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000826 [exp] 54 / 8e-09 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10041728 [exp] 54 / 1e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 51 / 1e-08 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002093 [exp] 54 / 2e-08 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10035556 [exp] 53 / 2e-08 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027886 [exp] 53 / 3e-08 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 53 / 3e-08 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079400 [exp] 172 / 1e-54 AT5G52545 79 / 1e-19 unknown protein Potri.012G038200 [exp] 55 / 2e-09 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 55 / 5e-09 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 51 / 2e-08 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 53 / 3e-08 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.005G148100 [exp] 52 / 6e-08 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.001G304000 [exp] 52 / 7e-08 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.003G023800 [exp] 51 / 7e-08 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.009G137200 [exp] 51 / 8e-08 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.018G002300 [exp] 51 / 9e-08 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10038840 pacid=23150389 polypeptide=Lus10038840 locus=Lus10038840.g ID=Lus10038840.BGIv1.0 annot-version=v1.0 ATGGTATTTCTTTTTCCTTATCATGATTTCATACATTTCTCTGGCACTGATCATAACGGTTTCACCGATGAGAAAGCAGAAAGCAGAGTTTACGTTGGTA ACCTTGACCTTAGAATAACAGAGGCGACTCTGATCAAGATGTTTTCCCCGTATGGTATGATCATCTCCGAGGACTTTCTATGGCACACCCGTGGCCCTAA ACGCGGGGAGCCACGTGGCTTCGCGTTCGTCCAGTTCAGCTCCAAAGAGGAAGCTAGATTAGCCAAGGAGAAGATGCACGGAAGGTTAGCTTGTGGCCGG CCATTGGTGGTACGTGTTTCCACCGAGCAAAACAACAACGATCAGTCATCGGCACCTCAAGGCTCTTCGAGAACAGCCAGGGAGACTAAGAAACCAGGAG GCCTCCATCTCCTTACTTCTTCTTCACGTACCATGGGGCAGAAGAAGACGAGCAAGAGTGCGAAAATCGCAGCGATAAAGAACAAGTTGAGAGCCTTGGA GGAAGAGACCACTGGTAGTAGTGTCGCCAAGAGACAGAAAACTGGCTGA
AA sequence Show only first row Show all	>Lus10038840 pacid=23150389 polypeptide=Lus10038840 locus=Lus10038840.g ID=Lus10038840.BGIv1.0 annot-version=v1.0 MVFLFPYHDFIHFSGTDHNGFTDEKAESRVYVGNLDLRITEATLIKMFSPYGMIISEDFLWHTRGPKRGEPRGFAFVQFSSKEEARLAKEKMHGRLACGR PLVVRVSTEQNNNDQSSAPQGSSRTARETKKPGGLHLLTSSSRTMGQKKTSKSAKIAAIKNKLRALEEETTGSSVAKRQKTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	0	1
AT5G52545			unknown protein		Lus10014958 [exp]	1.0	0.9130
AT1G45976		SBP1	S-ribonuclease binding protein...		Lus10001131 [exp]	2.6	0.8875
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	4.0	0.9017
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	6.0	0.8922
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	8.4	0.8398
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	8.5	0.8777
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	8.7	0.8751
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	9.6	0.8512
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	10.2	0.8921
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	11.3	0.8865

Compare expression of checked genes

Lus10038840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.