Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25680 313 / 9e-109 PPPDE putative thiol peptidase family protein (.1) AT4G25660 309 / 6e-107 PPPDE putative thiol peptidase family protein (.1) AT2G25190 95 / 2e-23 PPPDE putative thiol peptidase family protein (.1) AT5G25170 87 / 7e-21 PPPDE putative thiol peptidase family protein (.1) AT1G80690 84 / 1e-19 PPPDE putative thiol peptidase family protein (.1) AT1G47740 85 / 2e-19 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 84 / 4e-19 PPPDE putative thiol peptidase family protein (.1) AT4G17486 82 / 1e-18 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 84 / 2e-18 unknown protein AT3G07090 52 / 8e-08 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014960 [exp] 426 / 1e-153 AT4G25680 341 / 1e-119 PPPDE putative thiol peptidase family protein (.1) Lus10027510 [exp] 374 / 2e-132 AT4G25680 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1) Lus10039275 [exp] 370 / 8e-131 AT4G25680 348 / 6e-122 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 98 / 5e-25 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 97 / 1e-24 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10007844 [exp] 92 / 2e-22 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 90 / 7e-22 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10005341 [exp] 88 / 5e-21 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 87 / 8e-21 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143132 [exp] 357 / 6e-126 AT4G25680 331 / 2e-115 PPPDE putative thiol peptidase family protein (.1) Potri.004G079800 [exp] 353 / 2e-124 AT4G25680 339 / 1e-118 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 95 / 2e-23 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 94 / 2e-23 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 90 / 8e-22 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 88 / 4e-21 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 87 / 1e-20 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 87 / 2e-20 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.009G113168 [exp] 81 / 5e-18 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 80 / 8e-18 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10038841 pacid=23150542 polypeptide=Lus10038841 locus=Lus10038841.g ID=Lus10038841.BGIv1.0 annot-version=v1.0 ATGACGGATGTCGTATTGCACATATACGACGTGACAAACAGTGGATCGGAGAAGACGAACAGTACGATCATGCAGATCAACAAGATCTTCAAGGACGGAA TCGGCATCGGAGGCATCTTCCACAGTGCTGTTCAGGTATATGGAGAAGATGAGTGGTCTTTCGGTTTCTGTGAACGAGGAACCGGAGTGTTCAGTTGCCC TTCTGGAAAGAATCCAATGTATACATACCGTGAAAGCATCATCCTTGGCAAAACTAGCTTCTCAATCTCTAAAGTGAACCAGATCCTGCGCGAATTCAGT AGGGAATGGCCTGGAAATGCTTATGATTTGTTGGCCAAGAACTGTAATCACTTTTGTGATGAGTTCTGTGAGAAGTTAGGTGTACCGAAGCTTCCAGGTT GGGTTAACCGGTTTGCCAATGCTGGTGATGCAGCTGTCGAAATAGCTGGAAACACTGCCGTACGATTTAGGCAAGCAAAAACCGAGATCTTAACAGCTAG TAAAGTAGCCTATCGTTTCCTGTTGGGCGTTGGATCCAACAACGGTACTACTGGCAACTCTCCTGGCAACTCCTCTGGGTCTCCAAGGATTCAAGCAACT TGGTTCAAGAACCTCGTCACCAATGGTGCGAAACCATCTACCAGTACAGAGATCGACTCTCCGCAACAGCAGAAGAAGTCTCGACAGGAGCTGTCGGATA AGCTTCTTTTATCATGA
AA sequence Show only first row Show all	>Lus10038841 pacid=23150542 polypeptide=Lus10038841 locus=Lus10038841.g ID=Lus10038841.BGIv1.0 annot-version=v1.0 MTDVVLHIYDVTNSGSEKTNSTIMQINKIFKDGIGIGGIFHSAVQVYGEDEWSFGFCERGTGVFSCPSGKNPMYTYRESIILGKTSFSISKVNQILREFS REWPGNAYDLLAKNCNHFCDEFCEKLGVPKLPGWVNRFANAGDAAVEIAGNTAVRFRQAKTEILTASKVAYRFLLGVGSNNGTTGNSPGNSSGSPRIQAT WFKNLVTNGAKPSTSTEIDSPQQQKKSRQELSDKLLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25680			PPPDE putative thiol peptidase...		Lus10038841 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	8.1	0.9246
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	17.9	0.9211
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	18.8	0.9190
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	19.1	0.9230
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	19.5	0.8773
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	21.9	0.9206
AT1G44770			unknown protein		Lus10034500 [exp]	26.7	0.9211
AT3G51100			unknown protein		Lus10041813 [exp]	27.2	0.8911
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	31.8	0.9187
AT3G51100			unknown protein		Lus10028362 [exp]	32.2	0.8880

Compare expression of checked genes

Lus10038841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.