Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25670 120 / 3e-34 unknown protein AT4G25690 112 / 4e-31 unknown protein AT5G52550 96 / 3e-23 unknown protein AT4G25672 54 / 5e-10 CPuORF12 conserved peptide upstream open reading frame 12 (.1) AT5G52552 49 / 4e-08 CPuORF14 conserved peptide upstream open reading frame 14 (.1) AT4G25692 44 / 2e-06 CPuORF13 conserved peptide upstream open reading frame 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014961 [exp] 229 / 3e-77 AT4G25670 154 / 5e-48 unknown protein Lus10039276 [exp] 109 / 1e-29 AT4G25670 159 / 2e-49 unknown protein Lus10027511 [exp] 107 / 7e-29 AT4G25670 153 / 3e-47 unknown protein Lus10027512 [exp] 71 / 1e-16 AT4G25672 76 / 1e-20 conserved peptide upstream open reading frame 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079900 [exp] 127 / 2e-36 AT4G25670 159 / 2e-49 unknown protein Potri.017G143215 [exp] 107 / 7e-29 AT4G25670 151 / 4e-46 unknown protein Potri.004G080000 [exp] 71 / 2e-16 AT5G52552 83 / 2e-23 conserved peptide upstream open reading frame 14 (.1) Potri.017G143300 [exp] 64 / 7e-14 AT5G52552 82 / 3e-23 conserved peptide upstream open reading frame 14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038842 pacid=23150613 polypeptide=Lus10038842 locus=Lus10038842.g ID=Lus10038842.BGIv1.0 annot-version=v1.0 ATGCACAAGATGGGCAAATGCAATGGTTGGGGGAAGCTGGATAGATTGGCGCCAAGGAACAAATCTCTCAGCCGGTACCATTTCACGATTTCGCTGTCTC CTGTTATTTCGTTCTGGGATTGCATCGTTCGTAAGATGAGTAGGGAAGTTACAAAGTTGAGCAGTAAAACAGTTGGTTTGATAATGGATAGCATAGCGGG TACTAATATGCAACCGGTTGCAAGAAAAGCGAAGAAGAAGACAGTGAAAGGCGAGATAGACCGCCTCAAACAGGCCGAGAAGAAGAAGAGGCGCCTCGAG AAAGCTCTCGCTACGTCAGCAGCCATTAGGGCTGAGCTGGAGAAGAAGAAGCAAAACAAGAAAGAAGAACAACAGCGGCTCGACGAAGAGGGTGCCGCGA TCGCAGAGGCAGTAGCACTCCACGTTCTGCTGGGCGACGAAGACTCTGATGATTCTGATTCCGCTCGCAATAACCTCTTCCCTAATGGTTATCGTGCAAG CTACAATCGCAGCTGGTCTTCGTCCTTGTATGGCTTCAATGACAGAGGTCGGGGAACTGCGGAGTTATCTGCTGGGCTCATTGCTGCTCAGGCTGTTTCG TCTCTCCAGATCGGCGAATATCACTCCTTCTTTGGACGACAGTTCTCGAGTTGCCGCTAA
AA sequence Show only first row Show all	>Lus10038842 pacid=23150613 polypeptide=Lus10038842 locus=Lus10038842.g ID=Lus10038842.BGIv1.0 annot-version=v1.0 MHKMGKCNGWGKLDRLAPRNKSLSRYHFTISLSPVISFWDCIVRKMSREVTKLSSKTVGLIMDSIAGTNMQPVARKAKKKTVKGEIDRLKQAEKKKRRLE KALATSAAIRAELEKKKQNKKEEQQRLDEEGAAIAEAVALHVLLGDEDSDDSDSARNNLFPNGYRASYNRSWSSSLYGFNDRGRGTAELSAGLIAAQAVS SLQIGEYHSFFGRQFSSCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25670			unknown protein		Lus10038842 [exp]	0	1
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	1.0	0.9032
AT1G07020			unknown protein		Lus10042256 [exp]	4.1	0.8126
AT3G58800			unknown protein		Lus10007354 [exp]	4.2	0.8559
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	4.9	0.8441
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	5.7	0.8205
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	6.3	0.8418
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	7.3	0.8410
AT5G10780			unknown protein		Lus10040473 [exp]	7.7	0.8413
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	8.5	0.8203
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	12.6	0.8069

Compare expression of checked genes

Lus10038842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.