Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24020 432 / 3e-153 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014962 [exp] 268 / 1e-89 AT5G24020 288 / 2e-98 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080100 [exp] 438 / 2e-155 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01656 [flax] [poplar] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Lus10038843 pacid=23150485 polypeptide=Lus10038843 locus=Lus10038843.g ID=Lus10038843.BGIv1.0 annot-version=v1.0 ATGCTGTCCTTCAAATCTCACCACCACAATCCGACATTCCTCCATTCCTTAACCCTGCTCACATCTCCACCTCCCAAACCCCAAACCCTAAAACCACCGC GATCCCCCTCAATCCAATGCTCCTCATCTCTCCACTGGAACCGCAAGCCGGAGCTCGCCGGCGAGACTCCCCGAGTCGTCGTCATAACCTCCGGAAAAGG CGGAGTCGGCAAAACCACCACGACGGCCAACATCGGCATCTCCCTAGCCCGCCTAGGCTTCTCCGTCGTGGCAGTCGACTGCGACGTCGGCCTCCGTAAC CTCGACCTGTTACTTGGCCTCGAGAACCGCGTCAACTACACGCTCGTCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAGGCTCCGGTACGTGGCCAGC GTTGGTCCAATTTCGAGCTCCTCTGCATCTCCAAGCCGCGATCGAAGCTTCCGCTAGGATTCGGAGGTAAAGCACTCGTATGGCTTGTGGATTCTTTGAA AGAACGACCAGAAGGTTCCCCGCAGTTCATCCTAATTGACTGTCCAGCTGGAATCGACGCCGGATTCATCACCGCCATAACTCCGGCGAATGAGGCGGTC CTGGTGACGACTCCGGACATAACGAGCTTGAGAGATGCAGATAGAGTTACTGGATTGCTTGAATGCGATGGGATTAGAGATATCAAAATGATTGTGAACA GAGTTAGAACTGATATGATTCAAGGAGAGGATATGATGTCTGTGCTTGACGTTCAGGAGATGTTAGGTTTGGCTTTACTGGGGGCGATTCCGGAGGATTC TGAGGTGATCAGAAGTACTAACAGAGGGTATCCTTTGGTGTTGAATAAGCCGCCGACGTTGGCTGGGTTGGCGTTTGAGCAAGCTGCTTGGAGGCTTGTG GAGCAGGATAGTATGCAAGCTGTAATGGTGGAGGAGGAGCCGAAGAAGAAAGGGTTCTTCTCGTTCTTTGGTGGGTGA
AA sequence Show only first row Show all	>Lus10038843 pacid=23150485 polypeptide=Lus10038843 locus=Lus10038843.g ID=Lus10038843.BGIv1.0 annot-version=v1.0 MLSFKSHHHNPTFLHSLTLLTSPPPKPQTLKPPRSPSIQCSSSLHWNRKPELAGETPRVVVITSGKGGVGKTTTTANIGISLARLGFSVVAVDCDVGLRN LDLLLGLENRVNYTLVEVLNGDCRLDQAPVRGQRWSNFELLCISKPRSKLPLGFGGKALVWLVDSLKERPEGSPQFILIDCPAGIDAGFITAITPANEAV LVTTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTDMIQGEDMMSVLDVQEMLGLALLGAIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLV EQDSMQAVMVEEEPKKKGFFSFFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	0	1
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10014962 [exp]	1.0	0.8715
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	3.7	0.8516
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	3.9	0.8455
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	7.1	0.7949
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	8.7	0.8271
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	9.0	0.8018
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	9.4	0.8305
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	10.6	0.7852
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	16.2	0.8005
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027968 [exp]	16.5	0.7784

Compare expression of checked genes

Lus10038843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.