Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25720 369 / 2e-128 ATQC, QCT GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014963 [exp] 622 / 0 AT4G25720 374 / 3e-130 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073700 [exp] 415 / 2e-146 AT4G25720 369 / 2e-128 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3) Potri.017G146200 [exp] 404 / 2e-142 AT4G25720 367 / 6e-128 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF05096 [flax] [poplar] Glu_cyclase_2 Glutamine cyclotransferase
Representative CDS sequence Show only first row Show all	>Lus10038844 pacid=23150341 polypeptide=Lus10038844 locus=Lus10038844.g ID=Lus10038844.BGIv1.0 annot-version=v1.0 ATGGGCGCCACCAGATCGCTTAAGAAGATCAAGCGATCACCACCACCCACTAAAACTAACTCCTCCAATCTTCCCATGCCCACTCCTATATCTCCATTTC TCAATTGGAGGACCAAATCCCCGCTCTTCGTCTCCTTAGTAATGGCTTCCACCGTCATCCTTCTCATCGGAATCTCATCGATCGTCTGGAACAGCTTCTC CCCCGCCTCCGTCGTTGATGCAACGCCCAAAATCTACTCGATCCAGGTGGTCAGCGAGTACCCTCACGACCCCGAAGCATTCACCCAGGGTCTGCTTTAT GCTGGGAATGATAGCTTCTATGAATCAACTGGACTCTATGATAAGGCATCCTTCTCTACGGTTAGGAGAGTGAGTCTTCAGACTGGCAAGGTTGAGGCTA TCGAGGGCATGGATGGACAGTATTTCGGGGAGGGTTTGACTCTCATCGGCGAAAGACTGTTTCAAGTGACTTGGTTGACACGTACCGGTTTCTTGTATCA CAGAAGTAATCTAAGCAAAATCGGGGAATTCAGTCATCCAATGGAAGATGGATGGGGTCTGGCGACCGATGGAAAAGTTCTGTTCGGTAGCGATGGCACG TCCAAGCTGTATCAACTTGACCCCCTAACATTCAAAGTGATCAAAGAACAAACAGTGAAATACAATAACGTTGATGTACGCTACATCAACGAGCTAGAGT ATATAAACGGCGAAATCTGGGCTAACGTTTGGCAGACTGATTGTATCGCAAGAATATCGCCTCAAGACGGTACTGTTGTCGGATGGATTCTTCTTCCACA ACTGAGCAAGGGACTGAGAGCATCTGGGCACCGGGGAATCGATGTTCTTAACGGCATAGCATGGGATGGCGAAGGGAAGCGGCTTTTCGTGACCGGAAAG CTGTGGCCAAAGCTCTACGAAATCAAGTTACAACCAGTAAGGAAACAAATCAGCAGTGAAAACATCGAGCAGCTCTGCCTGCCATGA
AA sequence Show only first row Show all	>Lus10038844 pacid=23150341 polypeptide=Lus10038844 locus=Lus10038844.g ID=Lus10038844.BGIv1.0 annot-version=v1.0 MGATRSLKKIKRSPPPTKTNSSNLPMPTPISPFLNWRTKSPLFVSLVMASTVILLIGISSIVWNSFSPASVVDATPKIYSIQVVSEYPHDPEAFTQGLLY AGNDSFYESTGLYDKASFSTVRRVSLQTGKVEAIEGMDGQYFGEGLTLIGERLFQVTWLTRTGFLYHRSNLSKIGEFSHPMEDGWGLATDGKVLFGSDGT SKLYQLDPLTFKVIKEQTVKYNNVDVRYINELEYINGEIWANVWQTDCIARISPQDGTVVGWILLPQLSKGLRASGHRGIDVLNGIAWDGEGKRLFVTGK LWPKLYEIKLQPVRKQISSENIEQLCLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	0	1
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	9.4	0.6955
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	10.8	0.6970
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	13.0	0.6881
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	14.1	0.6928
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10004569 [exp]	21.5	0.6446
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	22.1	0.6702
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	29.8	0.6922
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	31.0	0.6807
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	31.2	0.6632
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	32.1	0.5854

Compare expression of checked genes

Lus10038844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.