Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52640 1132 / 0 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT5G56010 1113 / 0 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT5G56030 1113 / 0 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56000 1112 / 0 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) AT4G24190 612 / 0 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT2G04030 544 / 0 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT3G07770 543 / 0 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014964 [exp] 1242 / 0 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027303 [exp] 1171 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 1167 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 1153 / 0 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 1151 / 0 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10034535 [exp] 609 / 0 AT4G24190 1225 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10033135 [exp] 608 / 0 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10036843 [exp] 548 / 0 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10019206 [exp] 548 / 0 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146600 [exp] 1135 / 0 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.016G003400 [exp] 1078 / 0 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G466000 [exp] 1077 / 0 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 1073 / 0 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 1071 / 0 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.004G073600 [exp] 999 / 0 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.005G241100 [exp] 617 / 0 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.008G112700 [exp] 546 / 0 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.014G164900 [exp] 545 / 0 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Potri.010G136800 [exp] 538 / 0 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] PF00183 [flax] [poplar] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Lus10038845 pacid=23150730 polypeptide=Lus10038845 locus=Lus10038845.g ID=Lus10038845.BGIv1.0 annot-version=v1.0 ATGGCGGACGCTGAGACATTCGCTTTCCAGGCCGAGATCAACCAGCTTCTCAGCTTGATCATCAACACTTTCTATAGCAACAAGGAGATCTTCCTTCGTG AGCTCATCAGTAACTCCTCCGATGCTTTGGACAAGATCAGATTCGAGAGCTTGACAGATAAGAGCAAGCTCGATGGACAGCCTGAGTTCTTCATCAGGCT CATCCCTGACAAGGCCTCCAACACTCTTACCATCGTTGACAGTGGTGTAGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCAAGGTCC GGTACCAAGGAGTTCATGGAGGCTCTTCAGGCTGGTGCCGATGTGAGCATGATTGGGCAGTTCGGAGTTGGGTTTTACTCTGCTTACCTAGTGTCTGACA AGGTCATCGTCACCACTAAGCACAATGATGACGAGCAGTACGTCTGGGAATCTCAAGCCGGAGGTTCCTTCACTGTCACTAGGGACACTTCTGGGGAGCA GCTTGGCAGGGGAACCAAGATGGTCCTTCACCTCAAGGAAGATCAGCTTGAATACCTTGAGGAGAGGAGGATCAAGGACCTAGTAAAGAAGCACTCAGAG TTCATCAGCTACCCGATCTACCTCTGGACCGAGAAGACAACCGAGAAGGAAATCAGTGATGATGAGGACGAAGAGGAGCCCAAGAAGGAGGAGGAAGAAG GCGCTGTTGAGGAAGTCAATGAGGACAAGGACACTGAATCCAAGAAGAAGAAGAAGATCAAGGAGGTTTCCCACGAGTGGGATCTCATCAACAAGCAGAA ACCCATTTGGCTAAGGAAGCCAGACGACATCACCAAGGAAGAGTACGCTTCATTCTACAAGAGCCTTTCCAACGACTGGGAAGAACACTTGGCAGTCAAG CATTTCTCCGTTGAGGGCCAGCTAGAGTTCAAAGCAATCCTCTTCGTCCCGAAGAGAGCCCCATTCGACCTGTTCGACACCAGAAAGAAGATGAACAACA TCAAGCTCTATGTCAGGAGGGTGTTCATCATGGACAACTGCGAGGACCTAATCCCTGAGTGGCTTGGGTTCGTCAAGGGAGTCGTTGACTCTGACGATCT CCCTCTCAACATCTCCCGTGAGATGCTTCAGCAGAACAAGATCCTGAAAGTAATCAGGAAGAACCTCGTCAAGAAGTGCATTGAGATGTTCAACGAAATC TCCGAGAACAAGGAGGACTACAACAAGTTCTACGAGTCCTTCTCCAAGAATCTCAAGCTTGGAATCCACGAGGACAGCACAAACCGTGCCAAGCTGGCCG ATCTCCTCCGCTATCACTCGACCAAGTCCGGCGACGAGCTCACCAGCCTCAAGGACTACGTCACCAGAATGAAGGAAACCCAAAAGGACATATACTACAT CACTGGTGAATCCAAAAAGGCCGTCGAGAACTCCCCGTTCCTCGAACAGCTCAAGAAGAAGGGATATGAGGTTCTCTACATGGTGGACGCGATCGACGAG TACGCAACTGGACAGCTGAAGGAATACGACGGGAAGAAGCTGGTCTCTGCCACCAAGGAAGGACTCAAGCTCGAGGACGAGACCGAAGAGGAGAAAAAGA AGAAGGAAGAGAAGAAGGCCTCGTTCGAGGAGCTCTGCAAGACGATCAAGGACATTCTCGGCGACAAGGTGGAGAAGGTAATCGTCTCCGACAGGATCGT CGACTCGCCTTGCTGTTTGGTTACGGGAGAGTACGGGTGGAGCGCCAACATGGAGAGGATCATGAAGGCTCAAGCTTTGAGGGACAGCAGCATGGGGTCG TACATGTCGAGCAAGAAGACAATGGAGATAAACCCTGACAATGGCATCATGGACGAGCTGAGGAAGAGGGCTGCCGCTGACAAGAACGACAAGTCGGTCA AGGACTTGGTGCTACTGCTGTTCGACACCTCGATGCTCAACTCCGGGTTCAGCCTCGAAGATCCCAACACGTTCGCTACGAGGATTCACAGAATGCTGAA GTTGGGACTGAGCATCGACGAGGATGATGATGCTGCGGATGAGTCGGAGATGCCGCCTTTGGAGGATGAAGGTGCTGAGGAGAGCAAGATGGAGGAGGTT GATTAA
AA sequence Show only first row Show all	>Lus10038845 pacid=23150730 polypeptide=Lus10038845 locus=Lus10038845.g ID=Lus10038845.BGIv1.0 annot-version=v1.0 MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPEFFIRLIPDKASNTLTIVDSGVGMTKADLVNNLGTIARS GTKEFMEALQAGADVSMIGQFGVGFYSAYLVSDKVIVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKMVLHLKEDQLEYLEERRIKDLVKKHSE FISYPIYLWTEKTTEKEISDDEDEEEPKKEEEEGAVEEVNEDKDTESKKKKKIKEVSHEWDLINKQKPIWLRKPDDITKEEYASFYKSLSNDWEEHLAVK HFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEDLIPEWLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEI SENKEDYNKFYESFSKNLKLGIHEDSTNRAKLADLLRYHSTKSGDELTSLKDYVTRMKETQKDIYYITGESKKAVENSPFLEQLKKKGYEVLYMVDAIDE YATGQLKEYDGKKLVSATKEGLKLEDETEEEKKKKEEKKASFEELCKTIKDILGDKVEKVIVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMGS YMSSKKTMEINPDNGIMDELRKRAAADKNDKSVKDLVLLLFDTSMLNSGFSLEDPNTFATRIHRMLKLGLSIDEDDDAADESEMPPLEDEGAEESKMEEV D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	0	1
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10014964 [exp]	1.0	0.9639
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	3.0	0.9516
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	3.5	0.9514
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	3.7	0.9581
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	7.9	0.9231
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	8.1	0.9314
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	9.5	0.9288
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	10.1	0.9257
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	10.4	0.9394
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	10.6	0.9381

Compare expression of checked genes

Lus10038845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.