Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29260 97 / 3e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 95 / 1e-24 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 95 / 1e-24 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 89 / 4e-22 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 68 / 1e-14 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 64 / 4e-13 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G44020 60 / 2e-11 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 60 / 2e-11 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 56 / 8e-10 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014968 [exp] 201 / 1e-65 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 87 / 2e-21 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 86 / 3e-21 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 82 / 2e-19 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 82 / 2e-19 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 70 / 4e-15 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 69 / 7e-15 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152900 [exp] 103 / 6e-28 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 89 / 5e-22 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 80 / 8e-19 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 79 / 2e-18 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 71 / 1e-15 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 66 / 1e-13 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 62 / 1e-12 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10038847 pacid=23150696 polypeptide=Lus10038847 locus=Lus10038847.g ID=Lus10038847.BGIv1.0 annot-version=v1.0 ATGGCATCAGCACCCTCTCCATATCTCCTCCCCTTGATTTCCCTCATCTTAATCTTTCGATACTCCGCCGACGTCATCGCCGCCGCGGTTACCTACTCAC CAACCATCCAGCTACCCTCCGCCTCTGCCACCGCCGTCGACGGGGTTTCTAACAAATACGACAAGGTGTACTGCGACAGCTGGAAGCTGTTGGTGGAAAC GAACAATGCGGGCGATTTGGCGGCCACCAAGCCCACGAGGTGCCGCGATTACCTGGCGGAGTACTTGACCGGGAACGGCCACCTGGCGGATGCCGACATG GTGGCGTACGACGCGCTAACTTATGCCAGGACAGTGGAGATCGCTGGAGATGGGAAGGATGGTTGGATATTTGACCTTGATGAAACTCTGCTCACCAATT TGCCTTACTTCCGAGCCTACGTTTTCGGGTAA
AA sequence Show only first row Show all	>Lus10038847 pacid=23150696 polypeptide=Lus10038847 locus=Lus10038847.g ID=Lus10038847.BGIv1.0 annot-version=v1.0 MASAPSPYLLPLISLILIFRYSADVIAAAVTYSPTIQLPSASATAVDGVSNKYDKVYCDSWKLLVETNNAGDLAATKPTRCRDYLAEYLTGNGHLADADM VAYDALTYARTVEIAGDGKDGWIFDLDETLLTNLPYFRAYVFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	0	1
AT5G42760			Leucine carboxyl methyltransfe...		Lus10032713 [exp]	1.4	0.9574
AT3G29240			Protein of unknown function (D...		Lus10005224 [exp]	1.7	0.9515
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	2.4	0.9523
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	5.2	0.9256
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	6.3	0.9497
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	7.1	0.9459
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	9.4	0.9186
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	9.5	0.9243
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	9.9	0.8970
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	10.6	0.9296

Compare expression of checked genes

Lus10038847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.