Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19990 523 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017359 [exp] 657 / 0 AT3G19990 592 / 0.0 unknown protein Lus10010154 [exp] 651 / 0 AT3G19990 583 / 0.0 unknown protein Lus10028681 [exp] 123 / 4e-34 AT3G19990 110 / 4e-30 unknown protein Lus10028680 [exp] 0 / 1 AT3G19990 144 / 1e-40 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001200 [exp] 553 / 0 AT3G19990 632 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038848 pacid=23150642 polypeptide=Lus10038848 locus=Lus10038848.g ID=Lus10038848.BGIv1.0 annot-version=v1.0 ATGGCGCCAAACAACAGCAACAATAACAATGGTTCCACAACCACCACCGCAGTAGGTGAACTCCAGTCGATTCTAGCCGCCGCACGCCCTTTCCTCCGAG GCGAGCTCGAGTCCGTCGACGAAAAACTGCCGCGACTGGTGAGCGTTCTGCGGTCGGTCGGTGCAGGAGAATGCTGGCACAAGCACACCACCTTCGTGGA ACATCTCGTCGGCGTCTACCGCATCCTCAAGCTATGGGGAGCACCGGAGGCCGTCTGCCTCTGCGGCCTCTTCCACTCCTCCTACTCCAACGCCTACGTG AACCTCGCTATCTTCGATCCGTCCACCGCCGGCCGTGACGTCGTCCGCGGCCACGTAGGCGACGCCGCCGAGAGGCTGATTCACCTCTTCTGCATCGTGC CTCGCCAGTCGCTGATCCACGACAACCTCCTGTTCCATTACCCGGACGATTCAGAGCTCCTTCGGCACCTGGAGGATTCGGAAGCTTCGTTGCTGAATTC AGCGAGAGGAGATTCCCGCGACGCGGGGAGGGAAGCGTGGAGGGAGAAGCTGAATTCGTTGCTTCCGGCCGATGGAGTCAAGGTGAAGCACATCAGGACC GGAGAAGAGGTGGCGCTTTCTAGAAGAATGGTGGCTGCTTTTTTACCGATTACCATGGCCGATTTCAGCGATGAGTTGTTCGGATTCCAAGACGCGTTGT ACGAGAATTCGAACGGGAAACTGGAATTCTCCGGCAACGGATTCAAGTCTCTCTGGCCGGGGGACTGCAAGCCGGGGTTGTGGGTGAACTTAATTTCGAG GATGGGAGCTTTGTACACGCTGATTGTGAGGGAGGAGGAGATAATTAGGGCGGGAAAAAGGAAAGATGAAGATCTGGATCTGGATTTGGATTTGGTGATG CCGCCGATTCTGGAGGGATGCACGAGGATTGTGGATGCAGAGGAGCAGATTGAAGCGAGGGATCTATACTGGGCGGCGGTTTGCGGAAAGGGAAGTGAGG AGGCGGCGGTGGAGGAGATGTTGGTTGAGAGTATTGAGAAGAATCGGTTCGTCGGAGAGCCGCATTTGGCGGTGGCTCAGTTGTATCTGAACCAAGGGAG GTTCGAGGAAGCTGAACGGGAAGCGGAGACGGGATTGAGGCTGATTCTAGAGTGGGGGAGTCCGTGGGACAAGAGGATTTCTTGGGAAGACTGGGTTGCT TGGGCCAGGATTTTGGTTATGAAGGCTAAAGAAAAGTCTTGGCCCAATACTTCTTGGGGCATTCGTAAATTGGGCCTCGTCAGGTAA
AA sequence Show only first row Show all	>Lus10038848 pacid=23150642 polypeptide=Lus10038848 locus=Lus10038848.g ID=Lus10038848.BGIv1.0 annot-version=v1.0 MAPNNSNNNNGSTTTTAVGELQSILAAARPFLRGELESVDEKLPRLVSVLRSVGAGECWHKHTTFVEHLVGVYRILKLWGAPEAVCLCGLFHSSYSNAYV NLAIFDPSTAGRDVVRGHVGDAAERLIHLFCIVPRQSLIHDNLLFHYPDDSELLRHLEDSEASLLNSARGDSRDAGREAWREKLNSLLPADGVKVKHIRT GEEVALSRRMVAAFLPITMADFSDELFGFQDALYENSNGKLEFSGNGFKSLWPGDCKPGLWVNLISRMGALYTLIVREEEIIRAGKRKDEDLDLDLDLVM PPILEGCTRIVDAEEQIEARDLYWAAVCGKGSEEAAVEEMLVESIEKNRFVGEPHLAVAQLYLNQGRFEEAEREAETGLRLILEWGSPWDKRISWEDWVA WARILVMKAKEKSWPNTSWGIRKLGLVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19990			unknown protein		Lus10038848 [exp]	0	1
					Lus10012313 [exp]	5.5	0.9268
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	6.2	0.9489
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	6.7	0.9397
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	10.9	0.8873
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	11.3	0.9432
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	12.4	0.9223
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	12.8	0.9391
					Lus10018670 [exp]	18.6	0.8990
AT4G33820			Glycosyl hydrolase superfamily...		Lus10014646 [exp]	21.1	0.8697
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	21.8	0.9341

Compare expression of checked genes

Lus10038848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.