Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52780 123 / 3e-35 Protein of unknown function (DUF3464) (.1) AT4G19100 77 / 3e-17 PAM68 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012152 [exp] 78 / 1e-17 AT4G19100 190 / 4e-61 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1) Lus10007593 [exp] 75 / 2e-15 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072900 [exp] 109 / 7e-30 AT5G52780 101 / 2e-27 Protein of unknown function (DUF3464) (.1) Potri.001G132001 [exp] 78 / 3e-17 AT4G19100 153 / 2e-46 photosynthesis affected mutant 68, Protein of unknown function (DUF3464) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11947 [flax] [poplar] DUF3464 Photosynthesis affected mutant 68
Representative CDS sequence Show only first row Show all	>Lus10038849 pacid=23150260 polypeptide=Lus10038849 locus=Lus10038849.g ID=Lus10038849.BGIv1.0 annot-version=v1.0 ATGCTCTTGTCCCAAATTAATATCTCAATGAAAAAGTCCAAAATAAATAAATATCTTCCAATTAAATTCCAAAAAAAAAACCTTCAAACCAACACTGCCC ATTCTCCTTCACCAATCAGGATAAGCTCTGTTATCTCTTCCCTTCCAAACCCCCCCGCCATGAACGCTCTCTTCTCCTCACAGAAACCCCTCTTCTTCCA CCTCAACCCACCATTAATCCAACCTAAATGGAACCTCAACGCAACCTCCAAGGGCTTCGGCAGCCCGAATAAACCAACCAAACTATCTCGAATCATCACT GATCAACAACCCGAACCCAACAAACCCGAACCCCCCAAAGGAGGCAGAGTGGAGAAGGCGGACGAGATTCCGCAGGAGGTGTTCGAGAGGATGACGGCGA GGATATTCATCGCCGTCGGAGTCCCGATGGGGTTCGGAATCGGGCTGCTGTCGTTGATCGGGTACGTTAAGGAGAGGAATCTGGTGGATTTGCCACTGTG GGTGCCGTTCTTGACGACTCTGTTCACGTTCAGTGTTTCGATCATGGGGATCGCTTACGGCGGGTTGTCGACGAGCTTGGATAAGGATCGGAAAGGGAGC TTGTTGGGGATCGAGGAGGCTAAGGAGAATTGGGTTGAGATGTGGAAAGAAGATGAAGAGGAGCGGAAGAAGAAAGAAGAAGAGTGA
AA sequence Show only first row Show all	>Lus10038849 pacid=23150260 polypeptide=Lus10038849 locus=Lus10038849.g ID=Lus10038849.BGIv1.0 annot-version=v1.0 MLLSQINISMKKSKINKYLPIKFQKKNLQTNTAHSPSPIRISSVISSLPNPPAMNALFSSQKPLFFHLNPPLIQPKWNLNATSKGFGSPNKPTKLSRIIT DQQPEPNKPEPPKGGRVEKADEIPQEVFERMTARIFIAVGVPMGFGIGLLSLIGYVKERNLVDLPLWVPFLTTLFTFSVSIMGIAYGGLSTSLDKDRKGS LLGIEEAKENWVEMWKEDEEERKKKEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	0	1
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10021067 [exp]	3.2	0.8587
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	4.5	0.8670
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	9.5	0.8455
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10004660 [exp]	11.3	0.7621
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	12.6	0.8440
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10005882 [exp]	13.0	0.7894
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	15.2	0.8536
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	16.5	0.8441
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	16.6	0.7741
					Lus10019151 [exp]	19.5	0.8401

Compare expression of checked genes

Lus10038849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.