Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25640 625 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 608 / 0 MATE efflux family protein (.1) AT1G47530 452 / 8e-156 MATE efflux family protein (.1) AT3G26590 451 / 3e-155 MATE efflux family protein (.1) AT5G38030 447 / 1e-153 MATE efflux family protein (.1) AT1G12950 432 / 1e-147 RSH2 root hair specific 2 (.1) AT1G23300 428 / 5e-146 MATE efflux family protein (.1) AT3G21690 373 / 1e-124 MATE efflux family protein (.1) AT1G11670 368 / 8e-123 MATE efflux family protein (.1) AT1G61890 365 / 2e-121 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039263 [exp] 782 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 779 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036374 [exp] 597 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 562 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 456 / 3e-157 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 454 / 3e-156 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 453 / 4e-156 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 450 / 2e-154 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 444 / 8e-153 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147600 [exp] 609 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 601 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G161200 [exp] 551 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 450 / 1e-154 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 426 / 1e-145 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 385 / 9e-130 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102100 [exp] 384 / 3e-129 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 384 / 6e-129 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 379 / 4e-127 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 372 / 2e-124 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10038850 pacid=23150631 polypeptide=Lus10038850 locus=Lus10038850.g ID=Lus10038850.BGIv1.0 annot-version=v1.0 ATGGATTCCACGTCGACGCCGCTCCTCGCCCACCACCGAGCCGAACAAGGCGGCGGAGGAGACTATGCCGCCGTGACAACGTTCCTGGAGCTGCGGTCTG TGTTCAAGGAGGAGACGGTGAAGATGTGGAAGATTGCCGGACCGGTGGCGTTCAACACGCTCTGCCAGTACGGGCTCAACTCCGTGACCAACATGTTCGT CGGGCACATCGGGGATTTTGAGCTCTCCGCTGTCGCCATTTCGCTCTCCGTCATCGGAACGTTCACCTTCGGGTTCATGCTAGGGATGGGAAGCGCGCTC GAGACACTATGCGGGCAGGCATACGGGGCGGGGCAAGTCCACATGCTAGGAATCTACATGCAAAGATCGTGGATAATCCTCCTAGTCTCGTCCATCCTCC TGCTCCCGATCTACATCTTTGCCACCCCGATACTGATCCTCCTAGGCCAAGAGGAAGACATCGCGGATCTAGCCGGGAAATTCACCCTCCTAGTGATCCC CCAGCTCTTTTCCCTGGCGATAAACTTCCCCACCGCAAAGTTCCTCCAGGCCCAGAGCAAAGTCAACGCCCTGGCCTGGATCGCCTTCGCGGCTCTAGTC GTTCAGGTCCCCCTACTCTGGTTCCTTGTATTCAAGCTGAGCTGGGGGACCACTGGGGCCGCCCTGGCCTACGACATCACAAGCTGGGGGGTCGCCATAG CTCAGGTCGCCTACGTGGTCGGGTGGTGCAACGAAGGGTGGGGCGGGTTTTCGTGGTTGGCTTTTAAGGATCTTTGGGGGTTTGTGAAACTTTCCTTTGC CTCAGCAGTGATGCTTTGCCTTGAGGTTTGGTACTTGATGAGCATCATTGTTCTTACTGGTCATCTTGGTAATGCTGTCATTGCCGTTGGATCACTTTCC ATATGCATGAACTTCAACGGGTGGGAAGCAATGCTATTCATTGGGATCAATGCAGCCATAAGCGTTCGAGTATCGAACGAGCTCGGATCAGGGAGACCTA GGGCGGCCAAATACGCAGTCTACACAATCGTGTTCCAATCGTTCCTCATCGGGCTCTTCTGTATGGTGGCTGTGTTGATAACCAAAGATTACTTTGCAGT GATCTTCACCAGCAGCAAAGACCTTCAGGTTGCAGTCTCTAAGCTCGCCTTCTTGCTTGGGATCACCATGGTTCTCAACAGTGTTCAGCCTGTCATTTCG GGTGTGGCTATTGGAGCAGGATGGCAAGGCCTTGTAGCCTACATCAACATATTCTGCTACTATGTCTTTGGGCTTCCCCTAGGGTTTCTTCTGGGCTACA AAGCTAACTTGGGTGTCACGGGAATATGGAGTGGGATGATTGCAGGGACAGCTCTGCAGACTCTACTGTTGTTGATCATCCTGTACAGAACAAATTGGAA CAAAGAAGTGGAGCAAACAAATGAAAGAATGAGGAGGTGGGGTGGGCAAGAAACCGAACCGAAGGGCAAAATCAACGGTGTTTGA
AA sequence Show only first row Show all	>Lus10038850 pacid=23150631 polypeptide=Lus10038850 locus=Lus10038850.g ID=Lus10038850.BGIv1.0 annot-version=v1.0 MDSTSTPLLAHHRAEQGGGGDYAAVTTFLELRSVFKEETVKMWKIAGPVAFNTLCQYGLNSVTNMFVGHIGDFELSAVAISLSVIGTFTFGFMLGMGSAL ETLCGQAYGAGQVHMLGIYMQRSWIILLVSSILLLPIYIFATPILILLGQEEDIADLAGKFTLLVIPQLFSLAINFPTAKFLQAQSKVNALAWIAFAALV VQVPLLWFLVFKLSWGTTGAALAYDITSWGVAIAQVAYVVGWCNEGWGGFSWLAFKDLWGFVKLSFASAVMLCLEVWYLMSIIVLTGHLGNAVIAVGSLS ICMNFNGWEAMLFIGINAAISVRVSNELGSGRPRAAKYAVYTIVFQSFLIGLFCMVAVLITKDYFAVIFTSSKDLQVAVSKLAFLLGITMVLNSVQPVIS GVAIGAGWQGLVAYINIFCYYVFGLPLGFLLGYKANLGVTGIWSGMIAGTALQTLLLLIILYRTNWNKEVEQTNERMRRWGGQETEPKGKINGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10038850 [exp]	0	1
					Lus10001326 [exp]	6.5	1.0000
					Lus10014857 [exp]	8.0	1.0000
					Lus10015929 [exp]	9.2	1.0000
					Lus10026755 [exp]	11.2	1.0000
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039936 [exp]	11.7	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	13.0	1.0000
					Lus10039337 [exp]	13.2	1.0000
					Lus10016593 [exp]	14.1	1.0000
AT3G23940			dehydratase family (.1.2)		Lus10043131 [exp]	17.0	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	19.7	1.0000

Compare expression of checked genes

Lus10038850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.