Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52470 203 / 5e-65 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) AT4G25630 202 / 2e-64 ATFIB2, FIB2 fibrillarin 2 (.1) AT5G52490 181 / 1e-56 Fibrillarin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014969 [exp] 271 / 2e-92 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10039260 [exp] 268 / 4e-91 AT5G52470 312 / 3e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10027503 [exp] 268 / 4e-91 AT5G52470 313 / 2e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144800 [exp] 199 / 2e-63 AT4G25630 463 / 1e-165 fibrillarin 2 (.1) Potri.015G147500 [exp] 198 / 2e-63 AT5G52470 462 / 1e-165 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Potri.008G192700 [exp] 149 / 3e-44 AT5G52470 378 / 2e-132 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01269 [flax] [poplar] Fibrillarin Fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10038851 pacid=23150301 polypeptide=Lus10038851 locus=Lus10038851.g ID=Lus10038851.BGIv1.0 annot-version=v1.0 ATGGCGCCACCAAGAGGAAGATCGGGTGGATTCAGAGGAGGAAGGGGAAGCAGCGATGGGGGAGGAAGGGGCAGGGGAGGCGGACGTGGTGGAGGCGGGA GGTTCGGGGGCGACAGAGGAGGAAGTGGGTTTAAGCCTCGCGGTGGAGGCCGTAGCGGTGGCCGCGGCGGAGGAAGAGGAGGAGGACGCGGCGGCCGTGG CGGCGGCGGCGGAATGAGAGGTGGGACCAAAGTCGTGGTGGAGCCGCATAGACATGAAGGTGTGTTCATCGCTAAGGGGAAAGAGGACGCTCTTGTTACT AAGAACCTTGTTCCTGGTGAGGCTGTTTACAATGAGAAGAGGATCTCTGTTCAGAATGAGGATGGTACTAAGGTCGAGTACAGAGTATGGAACCCTTTCA GATCGAAGTTGGCAGCTGCGATTCTTGGTGGTGTTGACAACATTTGGATTAAACCCGGAGCTAAGGTTCTATACCTTGGAGCAGCATCAGGAACGACTGT ATCTCATGTGTCTGATCTTGTTGGACCAGCTAGGATTCTGGCACTCAATGCTTCCTACTTCTTGAAGGTCGGTGGTCACTTTGTCATCTCGATCAAGGCC AACTGCATTGACTCGACGGGTCCTGCTTAG
AA sequence Show only first row Show all	>Lus10038851 pacid=23150301 polypeptide=Lus10038851 locus=Lus10038851.g ID=Lus10038851.BGIv1.0 annot-version=v1.0 MAPPRGRSGGFRGGRGSSDGGGRGRGGGRGGGGRFGGDRGGSGFKPRGGGRSGGRGGGRGGGRGGRGGGGGMRGGTKVVVEPHRHEGVFIAKGKEDALVT KNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPARILALNASYFLKVGGHFVISIKA NCIDSTGPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10038851 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	1.0	0.9027
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	2.2	0.8257
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	5.8	0.8511
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	8.5	0.8189
AT5G22650		ATHD2B, HDT2, H...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10020543 [exp]	9.0	0.7754
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	13.5	0.8333
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	16.0	0.7714
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	16.9	0.8316
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10006419 [exp]	19.0	0.7792
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	19.5	0.7657

Compare expression of checked genes

Lus10038851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.