Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49080 356 / 1e-120 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT1G74970 100 / 2e-24 TWN3, RPS9 ribosomal protein S9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014970 [exp] 494 / 1e-174 AT3G49080 274 / 8e-95 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10032862 [exp] 100 / 2e-24 AT1G74970 282 / 1e-97 ribosomal protein S9 (.1) Lus10016295 [exp] 100 / 2e-24 AT1G74970 276 / 3e-95 ribosomal protein S9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144700 [exp] 395 / 6e-136 AT3G49080 353 / 5e-119 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.014G039600 [exp] 98 / 1e-23 AT1G74970 268 / 4e-92 ribosomal protein S9 (.1) Potri.002G132200 [exp] 97 / 3e-23 AT1G74970 267 / 1e-91 ribosomal protein S9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10038852 pacid=23150620 polypeptide=Lus10038852 locus=Lus10038852.g ID=Lus10038852.BGIv1.0 annot-version=v1.0 ATGCTATCTCGTCTTCGTCCCAAACCTTCACAGCTCCGACTACTCTCCCATCTCTCCTCCAAACCGCAACCTTCACCTCTCCCTACGTCCACCTTCGCCT CCATATTCCGCCCACTCTCCACCGGCGGCAGCAACAACAATGGCAGCGACGGCAGTGGGAAGGTGTCCGAAGAAGTCTGGAAGCTTTCGCAGGAAACCGG CGGATTAGCCGATTCGTTATTTAGCGACGAGGAGAAGGAGGATTTCGGTGGATTGCGCGGGATTTCCGAGTCGAAGGAGCCGGAGAAGTGGCTGATTGGA GAGGACGGCAAGAGAGGCGGCGGTGGAGGAGGGGATTCATTTGGAGGAGTTGTGAGCGGGACGGTGAAAACTTTGGCGGATGAGTCGGCGGATTTGTTGA ACCCATGGAGCTTGAAGGATGTAGGAGAGGAGAAGAACGATACGTTGTTTGAGTTGGATGAAGATTTAGGGCTTGGCGGCGGCCGTGGAGGTAGGATGGG GGGTAGTTTGAAGGAGGAGATTGAGAAGAGAGAGGCGGAGATGAAGAAGCTTGAGATTGAGGAGGAGAAGCTTACCGCCATTGTCAAAGGTCCGGATCGG GCATTCGGAGATCTGATTGCTGAATCCGGGATCACAGACGAAATGCTAGACAGCTTGATTGCCCTTAAGGACTTTGAAGGGATCCCAGGGTTGCCATCGT TGGGGGAGATAGAGGACATAAGGTACGAAAAGAGTACAAGGAGATCGGCAAGAGCTGAGATGGAAAGGCAGAAGCAGGAGGAGATTGGGAAAGCAAGGGT GAGGCAAGTGGATGACAAAGGAAGATCTTATGGAACTGGGAGAAGGAAATGCAGCATTGCCCGTGTGTGGATTCAACCAGGGGAAGGGAAATTCACGGTG AATGAGAAACAGTTCGACGTATACTTCCCCATGATCGACCATCGCGCTGCTCTTCTGAGACCGTTCTCGGAGACAAAGACCCTGGGGCTCTGGGATATCG ACTGTACTGTCAAAGGAGGCGGTGTTTCGGGTCAAGTCGGAGCGATTCAGTTGGGGATCAGCCGAGCCTTACAAAGCTGGGAACCAGACTTGCGGCCACC ACTCAGAGACGCTGGTTTCTTGACGAGGGATTCACGAGTGGTCGAGAGGAAGAAGCCGGGTAAAGCGAAAGCCAGGAAGAGCTTCCAATGGGTCAAGCGT TGA
AA sequence Show only first row Show all	>Lus10038852 pacid=23150620 polypeptide=Lus10038852 locus=Lus10038852.g ID=Lus10038852.BGIv1.0 annot-version=v1.0 MLSRLRPKPSQLRLLSHLSSKPQPSPLPTSTFASIFRPLSTGGSNNNGSDGSGKVSEEVWKLSQETGGLADSLFSDEEKEDFGGLRGISESKEPEKWLIG EDGKRGGGGGGDSFGGVVSGTVKTLADESADLLNPWSLKDVGEEKNDTLFELDEDLGLGGGRGGRMGGSLKEEIEKREAEMKKLEIEEEKLTAIVKGPDR AFGDLIAESGITDEMLDSLIALKDFEGIPGLPSLGEIEDIRYEKSTRRSARAEMERQKQEEIGKARVRQVDDKGRSYGTGRRKCSIARVWIQPGEGKFTV NEKQFDVYFPMIDHRAALLRPFSETKTLGLWDIDCTVKGGGVSGQVGAIQLGISRALQSWEPDLRPPLRDAGFLTRDSRVVERKKPGKAKARKSFQWVKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10038852 [exp]	0	1
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	4.2	0.7565
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	5.7	0.7058
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	6.7	0.7865
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	7.5	0.7711
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	16.5	0.7159
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	16.6	0.7184
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	21.0	0.7057
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	22.5	0.7117
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	23.4	0.7397
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	23.5	0.7157

Compare expression of checked genes

Lus10038852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.