Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09980 836 / 0 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT4G10760 129 / 2e-30 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014971 [exp] 1737 / 0 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10010408 [exp] 135 / 7e-35 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010405 [exp] 135 / 2e-32 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 134 / 6e-32 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144400 [exp] 1143 / 0 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.015G147200 [exp] 1142 / 0 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.001G085200 [exp] 137 / 1e-32 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05063 [flax] [poplar] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Lus10038853 pacid=23150481 polypeptide=Lus10038853 locus=Lus10038853.g ID=Lus10038853.BGIv1.0 annot-version=v1.0 ATGGATTCGCCTGAACGTGGCCGGAGCTATTCGAAACCAGAAGTGGATGATAGTTCGGATGTGAAGGGAGAAAAGGCAGGAGATGATGAAGACTGGGAGG GGAGTGACAAAAGGAAGCATAGATCGAGCAAGTCTAGAAAGTTGAGCAATGATGAAGGTGATGGATTAGATGTTAGTGGTAGGCGGAGGAGTTCCGGTGG AGAAAGGAGTGAGAGCCGTAAAAGGTCAGGAGTAGGTGGTGGCAGCTCTAGCAGAGTTGGGAGTGACGAAGATGATTACGAAGCTCGGAAGGATTCAAGG TCGAAGAAGAAACAAGAAGAGAGTAGCTTGGAGAAGTTAAGTAATTGGTACCAAGAAAGTTCGAAGGGGGGAAGTAAAAGCAAAGAAGAGAGGTCTGTTG ATGGAGAGCAGGAGAAGGCACTGGATAAAGAGGATAAGTATTCCGACAGGAGAGAAAGCAGTCGAGAGAAAGGCCATGAAGGGAGGAACTCGAGGAGAAG ATGGGATGAATCAGATGCTGACAAAAAAGGTGAAGAAATTGAGAAGACAGAGACGAGAGGGGGGAAGTCTTCTGATTCTAAGCATGAGAGCTCCAAAGAG AGAACTTCTTCTTTTTCTAAACTTGAACAAGGTGAAACGAAGGGCAAAAATGTGGAAGTGATCAGTGAGAAGAGTATGAAAAGTGATAGACGAGATGATG GGGAAAGAAGTAAGAACAAGCACAGGTCAGAACCTGTAGAGGAAGACAATACGGATGACAGGTCAGCTCGGGAGAAAAGTGAGAAGCACAGACAACAGAG GTCTTCTTCTGGTAGGGATATTACTGAGAGCCGTGAAAAATCCTCCCATTTCGATGAAGATGGAACGAGAGAGAAGGGTTCGAGAGACGTAGCACGTTCT AACAGGTCTAGGACCCCCGAGAGGAATTCTGATTCTAGGCGAAGGGACAATGAGAAAGATAGTCACAAGGATGATAAAGCAAAAGGCCGAGATGACAACT GGAGTGATCGGACTAGGGACCGTGAAACATCCAAAGACAACTGGAAGAGAAGGCAACCTGAGAGAGAGTTGAAAGATGGAGATGTTATGTATGATCGTGG GAGAGACTGGGAGCCGAGACATGGTCGAGAAAGGATTGATAACGAAAGGCCTCACGGTCGAAACAGAGGTGAAGCTGTGAAAACCTCGTCAAATTTTGGG ATTTCGAATGAGAATTATGATGTCATAGAAATCCAAACCAAGCCTCTCAATTACGGACGGGCAGAGTCTGCTTCAAACTTCCCTAGGAAAGTCGAGACGA GTAATGACATGAAGTCAGCCACACCTGTTGAAGAGGGGAGAAGGAATGATTTATTTGGGCCTGGATCTTCGGCCGAGGATTCTAGGGAAAAATATGGGGA TGATTCTACATCAACGCAGGATGCTGGTTCATGGAGAGACGAAAATGACACACAGGGAGGGAAAGGAAGATGCCAGAAGAGCACTTCGTCTGGTCGTGGC GGTGGTTCAAGTTCTTCCGGAGGTTACGGAAACCAGGATCCTGGCTCCTTTGGTAGATCTCTTCCACAGGGTGTGAAAGGAAATAGGATGGGGAGAGGAG GAGGAAGAGGGAGGCCTGCTGGGAGAGACAATCAACAGGTTGGAATTCCACTGCCCATGATGGGATCTCCATTTGGACCACTTGGGATTCCTCCTGGATC ATTGCAACCCCTTGGCCCCGGTATGCCACAAGCACCGGGTCCTCCGATCCCTGCTGGAGTCTTCATTCCACAGTTTCCGCCTGTTGTTTGGCCTGGTTCT CGTGGTGTCGACATGAATTTGCTCGGTGTTCCACCTTCTTTATCTCCTATTCCGCCTGGACCTTCAGGCCCGAGATTTCCACTGAATTTAGCCACTCCAT CAAACTCGGCTATGTTCTTCAATCAGGCAGGAGCTGGAAGGGGAGCACCTGGTAATATGTCCGCCCCTGGTTTTAATCCTTCAGGACCAGCTGGACGGGG GACTCTTCCACTGGAGAAAACCCCTGGCGGCTGGACACCCTCTAGACCTCCTGGCAAAGCTCCTTCCAGGGGTGAACAAAATGATTACTCCCAGAATTTC GTTGATACCGGTATGCGACCTCAGAATTTCATTCGGGAGCTTGAGCTGACTAACGTGGTTGAGGATTATCCCAAACTTAGGGAGCTTATACAGAAGAAGG ACGAGATTGTGGCCAATTCAGCATCTGCTCCTATGTATTTACAACGTGACCTCCGTGAATTTGACCTCTCCCCCGAGTTCTTTGGGACCAAGTTTGACGT TATCTTGGTTGACCCGCCGTGGGAAGAGTATGTTCATCGGGCTCCTGGGGTTGCTGATCATATGGAGTACTGGACATTTGAAGAAATCTTGAATCTTAAG ATCGAGGCAATTGCAGATACTCCGTCTTTCCTCTTCCTTTGGGTCGGTGATGGCGTGGGACTCGAACAAGGTCGTCAATGCTTGAAGAAGTGGGGGTTCC GTAGATGCGAGGATATTTGTTGGGTCAAAACCAATAAAAGCAATGCAACTCCAGGACTGCGACACGATTCCCATACTTTATTTCAGCACTCAAAGGAACA TTGCTTGATGGGGATTAAAGGAACAGTTCGCCGAAGCACCGATGGCCATATTATACATGCCAACATCGACACCGATGTGATTATTGCTGAGGAGCCTCCT TACGGTTCGACTCAGAAGCCTGAAGACATGTATCGAATCATCGAGCATTTCTCCCTTGGTCGAAGGAGGCTCGAACTCTTTGGCGAGGATCATAACATCA GAGCTGGCTGGTTGACAGTTGGTAAAGAACTATCATCGTCAAATTTCAGCACCGAGGCTTATATCAAGAACTTCGCGGACAAGGACGGGAAAGTGTGGCA AGGAGGCGGTGGCCGGAACCCACCACCGGAGGCGCCCCATCTGGTCGTAACCACGCCCGACATCGAATCACTTCGGCCGAAATCGCCAATGAAGAACCAA AACCAGCAGCAACAAACAGCGTCCATATCTCTCACTACTACCAATTCCTCCATCAGAAGGCCTACTACTACTACCACCGCAAACTCTCCGCACAACGCAT TCGTGATCAGCCAAGACGCTGCTCCATCCAGCGCAACTCCGGCTCCTCCTCCGTGGGCTGCCGTGGCGCCAACTCAGGCGCCATTGAATAATGGTATGTC GGCGCCGCAAGATGATAAGGCTTTTGAAATGTACGGATACAACAACAATGTTGCTCCTCTTGCTAGTAATGGAGGAGATCAGTACCATGATTTCGATCCA CATAGACCGATGAATTTGTTGTAG
AA sequence Show only first row Show all	>Lus10038853 pacid=23150481 polypeptide=Lus10038853 locus=Lus10038853.g ID=Lus10038853.BGIv1.0 annot-version=v1.0 MDSPERGRSYSKPEVDDSSDVKGEKAGDDEDWEGSDKRKHRSSKSRKLSNDEGDGLDVSGRRRSSGGERSESRKRSGVGGGSSSRVGSDEDDYEARKDSR SKKKQEESSLEKLSNWYQESSKGGSKSKEERSVDGEQEKALDKEDKYSDRRESSREKGHEGRNSRRRWDESDADKKGEEIEKTETRGGKSSDSKHESSKE RTSSFSKLEQGETKGKNVEVISEKSMKSDRRDDGERSKNKHRSEPVEEDNTDDRSAREKSEKHRQQRSSSGRDITESREKSSHFDEDGTREKGSRDVARS NRSRTPERNSDSRRRDNEKDSHKDDKAKGRDDNWSDRTRDRETSKDNWKRRQPERELKDGDVMYDRGRDWEPRHGRERIDNERPHGRNRGEAVKTSSNFG ISNENYDVIEIQTKPLNYGRAESASNFPRKVETSNDMKSATPVEEGRRNDLFGPGSSAEDSREKYGDDSTSTQDAGSWRDENDTQGGKGRCQKSTSSGRG GGSSSSGGYGNQDPGSFGRSLPQGVKGNRMGRGGGRGRPAGRDNQQVGIPLPMMGSPFGPLGIPPGSLQPLGPGMPQAPGPPIPAGVFIPQFPPVVWPGS RGVDMNLLGVPPSLSPIPPGPSGPRFPLNLATPSNSAMFFNQAGAGRGAPGNMSAPGFNPSGPAGRGTLPLEKTPGGWTPSRPPGKAPSRGEQNDYSQNF VDTGMRPQNFIRELELTNVVEDYPKLRELIQKKDEIVANSASAPMYLQRDLREFDLSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEILNLK IEAIADTPSFLFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPP YGSTQKPEDMYRIIEHFSLGRRRLELFGEDHNIRAGWLTVGKELSSSNFSTEAYIKNFADKDGKVWQGGGGRNPPPEAPHLVVTTPDIESLRPKSPMKNQ NQQQQTASISLTTTNSSIRRPTTTTTANSPHNAFVISQDAAPSSATPAPPPWAAVAPTQAPLNNGMSAPQDDKAFEMYGYNNNVAPLASNGGDQYHDFDP HRPMNLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	1.0	0.9563
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	1.7	0.9445
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	2.0	0.9498
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	3.5	0.9419
AT5G19950			Domain of unknown function (DU...		Lus10019397 [exp]	3.7	0.9207
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	5.7	0.9377
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	6.3	0.9286
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	6.3	0.9423
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	7.3	0.9146
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	7.9	0.9308

Compare expression of checked genes

Lus10038853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.