Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23890 614 / 0 unknown protein AT5G52410 522 / 4e-173 unknown protein AT3G25680 180 / 6e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014972 [exp] 1411 / 0 AT5G23890 700 / 0.0 unknown protein Lus10035054 [exp] 180 / 8e-48 AT3G25680 472 / 2e-161 unknown protein Lus10021714 [exp] 180 / 4e-47 AT3G25680 456 / 1e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145700 [exp] 779 / 0 AT5G23890 709 / 0.0 unknown protein Potri.012G142500 [exp] 746 / 0 AT5G23890 650 / 0.0 unknown protein Potri.010G131000 [exp] 191 / 9e-52 AT3G25680 502 / 2e-173 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038854 pacid=23150622 polypeptide=Lus10038854 locus=Lus10038854.g ID=Lus10038854.BGIv1.0 annot-version=v1.0 ATGGCTTCATCAATCTGCTCCCCGAGCTGTCCTCAGCTCCGATTGGCATTCAGCTCTCGGGGATCGCTTCTGGTAAGGACGAAGCTCATCGATTGCAAGA ATCTTCGCCTCCTCTGCTCGGCTCAGTACGGGAGGATACGGTCTGGTGATTGTAGGCGTAGCTCTGTTGTCTCCGCCTCCACCAAGGATAGCAGTTTCGC CGGATGGTCCGATTCGGCTACTATGGAGGAGGAGAAGGATGGTGAATCAAAGTCTTCTGAGGGGAAGAATTGGTTCGGAGGGAATGTGGCGGCCGGAGCT GCTGGGGTTGTGTTGTTCGCCGGTGTTGCGTTGGCCGGTTTGGCTGTGTCTAATCGGAGCACTTCAAGACGGGAACAACAGATGGAGCCATTAACGCCTC AACAAGAAGTGATTTTGTCATCTGAAAAGGAGGAGGAGGATGGAATTGAGGGGGAAAACCTTGGGAAGATTGATGAGAGTGAGTTGGATGATACTAAGGA GGATGTAGCTCAGTCTAATGAACTTGAGGAAGATATGCTTGTTAATGGCGATCAACTTCCTCCAGCTGACATTGGTAATGTTGGTATCGCTGCAGCAATC GTGCATGTTTCTGTTGATAATGATGAGTTGACTGTTGGTGAAGAATCAGTTGCTCCTGAAATGGATTCAAGCTCAAGTGACATGCAATCACTTTCGGAGG CTGTGGATACTTTGTCTGTGGCAGTTGATAAGCTTGACTTGGAATCTGATTCGCTGAACAGTAAGGTTGATGAACTTGTGGATTTGTCTGCCGCCTTACA GTTTGAAGAAAATTCCATTTCTTTGGACTCCTCTAGTCCTGTGGTTGATGAATCCAGCAAGCCTGAAGATGCAAGTGTTTCTGAAACTCCATTGGTGGAT ACGACTCTGGAGGATGTTGCACCAAAGGAGAACCTTGAACAGAGCGAAGTTTTAGAGGTGAAGAGAGAGGAAGTTACTTTATCCTTAGAGGTAGATTACA TGCAAGAAAATGTGTCTGCTGAAGCATCTTTGCCACCACCATTACCTTCGATGAACGAACAAGAGACGATTGTAAATGAGATGGATGAAAGCAGTTCGTC GATGGAGTCGACTCCCTTCCTCCCTGTTGGGATACCGGCTCCATCTACTGTTTTCGAGGCTTTGCGGGTGCCGCCTGGAAAGGTTCTGGTTCCTGCTGTT GTTGATCAGGGTCAAGGTCAGGCACTTGCAGCCTTGCAGGTCTTGAAGGTAATTGAGCCTGAAGCTCAACCTAGTGAATTATGCTCACGTCGTGAGTATG CTCGTTGGTTGGTTTCTGCTAGTGCTGCTCTTTCAAGGAACTCCGTGTCGAAAGTGTATCCTGCCATGTACATAGAGAATGTTAGCAAACTTGCATTTGA CGATATCACTCCTGACGATCCCGACTTCTCATCCATTCAAGGCTTGGCTGAATCAGGGCTTATTTCAAGCAAGCTTTCGATTTGGGATTTGCAATCTGTC TCAGATGATGAGCAAGGTCCATTTTACTTCTCTCCTGAAAGCCCTTTATCACGTCAGGACCTTGTTAGTTGGAAGATGGCCCTAGAGAAAAGGCAACTTC CAGAAGCTGATAAAACGACCCTTTATCAGGTCTCTGGTTTTAGAGATATTGATAGAATCCACCCAGATGCATGGCCTTCACTAGTAGCTGATTTATCTGC AGGAGATCAAGGAATTATATCTCTTGCTTTCGGTTGCACACGGCTCTTCCAACCTGACAAACCCGTCACTAAGGCCCAAGCCGCCATTGCTCTTGCACTC GGTGAAGCATCCGACGTGGTCAGTGAGGAGCTTGCCCGAATTGAGGCAGAATCCATGGCGGAAAACGCTGTGTCTGCCCACAATGCTTTAGTGGCTGAAG TAGAACAGGATATCAATGCCGGATTTGAAAAGGAGCTCTCCATAGAGAGAGAGAAGATCAATGCTGTACAGAAAATGGCTGAAGAGGCAAGCAGTGAATT GGCAATGTTGAAAGCTCAGAGGGAGGAAGATAATATTGCACTGATGAAGGAACGCGCTGCCATTGAAGCGGAAATGGAACTTCTCTCGAGGATCCGGCAT GAGATGGAGGAGCAACTGCAGAACCTCTTGACGGACAAGGTTGAGATATCGTATGAAAAGGAAAGGATTAGCAAGCTGCAGAAACAGGCAGAGGAAGAAA AGGAAGCGGTTTCCCGACTGCAATACGAACTCGAGGTCGAGAGACGCGCCTTGTCCATGGCCAGGGCATGGGCAGAAGACGAGGCGAAACGAGCCAGAGA ACAAGCAAAAGCACTCGAAGAGGCTAGAGACAAGTGGGAGAAACAAGGCATCAAAGTAGTCGTAGACAGCGACCTCCAGCAAGAACAAAGCTCCGCTGAA GCAACATGGGAAGCCACTGCTGCCTCGGAGGAGCCATTCTCCGTCGAAGCAGCAGTCAACAGGGCGGAAACATTGAAAGGCAAGCTCAAGCTCTTTTCGG AACAAGTGACCGGGAAATCGAAAGAAATCATCAACGCCATCATCCAGAAGATCCTCGCTTTCATCTCAGCTCTGAAAGCGTGGGCTTCAGAGACCAGCTC ACAAGCCGATCAAGTAAAGGACGCTACTCTGGCGAAGGCACGTGAATCGATACAAGGGTTTCAGAAGAACACTGCAGAGTTGAGCATTGCCGTGAAGGAC AAGGCAAGCGGATCGATCCAGGAGATGCAGCAGACAACTGCAGGGGTCGGATCAGCTGTAAAGGAAGGCGTTAAACGTGTAGCGGGAGACTGCAGGGACG GTGTAGAGAAGCTTACGCAGAGATTCAAGTCGTGA
AA sequence Show only first row Show all	>Lus10038854 pacid=23150622 polypeptide=Lus10038854 locus=Lus10038854.g ID=Lus10038854.BGIv1.0 annot-version=v1.0 MASSICSPSCPQLRLAFSSRGSLLVRTKLIDCKNLRLLCSAQYGRIRSGDCRRSSVVSASTKDSSFAGWSDSATMEEEKDGESKSSEGKNWFGGNVAAGA AGVVLFAGVALAGLAVSNRSTSRREQQMEPLTPQQEVILSSEKEEEDGIEGENLGKIDESELDDTKEDVAQSNELEEDMLVNGDQLPPADIGNVGIAAAI VHVSVDNDELTVGEESVAPEMDSSSSDMQSLSEAVDTLSVAVDKLDLESDSLNSKVDELVDLSAALQFEENSISLDSSSPVVDESSKPEDASVSETPLVD TTLEDVAPKENLEQSEVLEVKREEVTLSLEVDYMQENVSAEASLPPPLPSMNEQETIVNEMDESSSSMESTPFLPVGIPAPSTVFEALRVPPGKVLVPAV VDQGQGQALAALQVLKVIEPEAQPSELCSRREYARWLVSASAALSRNSVSKVYPAMYIENVSKLAFDDITPDDPDFSSIQGLAESGLISSKLSIWDLQSV SDDEQGPFYFSPESPLSRQDLVSWKMALEKRQLPEADKTTLYQVSGFRDIDRIHPDAWPSLVADLSAGDQGIISLAFGCTRLFQPDKPVTKAQAAIALAL GEASDVVSEELARIEAESMAENAVSAHNALVAEVEQDINAGFEKELSIEREKINAVQKMAEEASSELAMLKAQREEDNIALMKERAAIEAEMELLSRIRH EMEEQLQNLLTDKVEISYEKERISKLQKQAEEEKEAVSRLQYELEVERRALSMARAWAEDEAKRAREQAKALEEARDKWEKQGIKVVVDSDLQQEQSSAE ATWEATAASEEPFSVEAAVNRAETLKGKLKLFSEQVTGKSKEIINAIIQKILAFISALKAWASETSSQADQVKDATLAKARESIQGFQKNTAELSIAVKD KASGSIQEMQQTTAGVGSAVKEGVKRVAGDCRDGVEKLTQRFKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52410			unknown protein		Lus10038854 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	4.7	0.8238
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	5.3	0.8180
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	7.7	0.8161
AT4G29270			HAD superfamily, subfamily III...		Lus10011140 [exp]	8.1	0.7498
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	9.4	0.7634
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	10.2	0.8054
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	12.2	0.8470
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	12.4	0.7952
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	14.4	0.7550
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	15.0	0.7771

Compare expression of checked genes

Lus10038854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.