Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25600 199 / 7e-62 Oxoglutarate/iron-dependent oxygenase (.1) AT3G28480 190 / 6e-58 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 176 / 6e-53 Oxoglutarate/iron-dependent oxygenase (.1) AT3G06300 151 / 3e-43 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT5G18900 149 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 86 / 7e-19 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 81 / 3e-17 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G20270 79 / 1e-16 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 76 / 2e-15 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G33910 62 / 9e-11 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014973 [exp] 451 / 3e-160 AT4G25600 211 / 9e-67 Oxoglutarate/iron-dependent oxygenase (.1) Lus10032183 [exp] 171 / 2e-50 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 165 / 3e-48 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 151 / 5e-43 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 151 / 6e-43 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032184 [exp] 99 / 4e-25 AT3G28480 206 / 2e-67 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10028404 [exp] 74 / 7e-15 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 74 / 8e-15 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031048 [exp] 60 / 3e-10 AT2G43080 406 / 7e-145 P4H isoform 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142800 [exp] 289 / 2e-96 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.017G075100 [exp] 177 / 4e-53 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 145 / 8e-41 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075300 [exp] 133 / 2e-36 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G245300 [exp] 80 / 1e-16 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G108000 [exp] 79 / 2e-16 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 76 / 3e-15 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G052600 [exp] 71 / 1e-13 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 64 / 2e-11 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 64 / 3e-11 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like
Representative CDS sequence Show only first row Show all	>Lus10038855 pacid=23150246 polypeptide=Lus10038855 locus=Lus10038855.g ID=Lus10038855.BGIv1.0 annot-version=v1.0 ATGGCGAAATCATTGGCATTCAGTTCTTCACCAGTTATTCATTCCATTTCGCTTCTTCCTGAGCTGCTGCGGCATTCATCAATGGCGGACATCGTATACT TCCTCATTCTCATCGCTCTCCTAAATCCGCCCTCCGACTCTTTCGCCGAGAGCCGGAAAGAGTTGAGGGATAAGGCGGAGCTCAACAGCGAAAGTGTGAT TCAGTTAAGAAGCTCAATCCCCTTTAATAGGATGGATCCGTCACGAGTTGTTTCACTCTCTTGGCGACCAAGGGTGTTCTTACATGAAGGCTTTCTAACA GATGAGGAATGTGATCATCTTGTTTCTATGGCACAAGCACCGAAGGAGGAAATTGCTGGAAATGGTGATAATTCCATCCAGACGGCAAAGAAGAGGATGC TTGCTAGTAAAAAGCTTCTTTCAGATGCGGATGATAGTATAATTGCGAGTATTGAGGAACGGATTTCAGCCTGGACTTTGCTTCCCCATGGTAACAGCCA TCCATTACAGATCACACATTACGAGGTAGAAGATCCCGCCACCATGCAGAAGAACATCACGTACTTCAGCAACCAATCCTTATCATCAACCTTCAAACAC CCTCTCCTCGCAACTCTAGTGCTATACCTCTCGAACGTGACCCGAGGCGGACAAATTCTCCTCCCTCATTCACAGGAGAAGAGCAAGATATGGTCCAATT GCGCAAAGAGCAGTGACATTCTAAGGCCGTCAAAAGGGAAAGCGATCTTGCTCTTCAACCTTCTCCTCGACGGTTCCCCTGACCCGAGCAGCTCCCACTC TAGGTGTCCTGTTCAGGAAGGGGAAATGTGGGTTGCTACCAAACTGTTCTTTGTAAAACCTGTCACTGCTGGAAAGCTTCCCACTCGTCGATCATCATCG GATGGCAGCAACAACAACAACAACGATGATTGCACCGATGAGGACGATAATTGCCCATCATGGGCTGCTAATGGTGAATGCCAGAGGAATCCTGTCTATA TGATTGGTTCTGATGACTACTTTGGTACTTGTCGGAAGAGTTGTAAAGCTTGCTGA
AA sequence Show only first row Show all	>Lus10038855 pacid=23150246 polypeptide=Lus10038855 locus=Lus10038855.g ID=Lus10038855.BGIv1.0 annot-version=v1.0 MAKSLAFSSSPVIHSISLLPELLRHSSMADIVYFLILIALLNPPSDSFAESRKELRDKAELNSESVIQLRSSIPFNRMDPSRVVSLSWRPRVFLHEGFLT DEECDHLVSMAQAPKEEIAGNGDNSIQTAKKRMLASKKLLSDADDSIIASIEERISAWTLLPHGNSHPLQITHYEVEDPATMQKNITYFSNQSLSSTFKH PLLATLVLYLSNVTRGGQILLPHSQEKSKIWSNCAKSSDILRPSKGKAILLFNLLLDGSPDPSSSHSRCPVQEGEMWVATKLFFVKPVTAGKLPTRRSSS DGSNNNNNDDCTDEDDNCPSWAANGECQRNPVYMIGSDDYFGTCRKSCKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10038855 [exp]	0	1
AT5G17620			unknown protein		Lus10013643 [exp]	11.9	0.7549
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	12.6	0.7240
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	16.1	0.7406
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	22.8	0.7526
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	28.8	0.7526
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	32.2	0.7517
AT3G19540			Protein of unknown function (D...		Lus10026605 [exp]	35.7	0.6723
AT4G31980			unknown protein		Lus10038338 [exp]	44.8	0.6761
AT1G52155			unknown protein		Lus10025835 [exp]	51.7	0.7151
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	56.6	0.6988

Compare expression of checked genes

Lus10038855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.