Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25610 348 / 9e-113 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014974 [exp] 941 / 0 AT4G25610 426 / 6e-143 C2H2-like zinc finger protein (.1.2) Lus10027491 [exp] 607 / 0 AT4G25610 446 / 2e-149 C2H2-like zinc finger protein (.1.2) Lus10039246 [exp] 590 / 0 AT4G25610 425 / 4e-141 C2H2-like zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G143200 [exp] 444 / 7e-149 AT4G25610 400 / 2e-131 C2H2-like zinc finger protein (.1.2) Potri.015G146300 [exp] 439 / 1e-146 AT4G25610 386 / 6e-126 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038856 pacid=23150368 polypeptide=Lus10038856 locus=Lus10038856.g ID=Lus10038856.BGIv1.0 annot-version=v1.0 ATGCCAGTTGTGAAACAGAAAGCGGGCAACACTACTGATGTAATGAAATCAGAAGAAGGCAATGGTTCCCTAGACACGTTTATTAGGCAAGCAATGGGGA AGGAGCCTTTGCTTTCCTTCCCAAGGACTAATGATAACCCAGTACAGTGGATCCAACTGCTTCAAGCTCTCGACCAGCAAGATGGACCTGGTTGGCCTTT ACTCACTCCTTTGAAGGTTCAAATGCAGAAATGCGACAAATGTTCACGGGAGTTTTGCTCCTCTATAAATTATAGAAGGCACGTACGAGTTCACCATCGG CTGAAAAAGCTTGATAAGGCTTTGCCTGTCATGTCACTTCTCTTGAATGAAAGCATTCTAAAAGACGTTTTACTTGGTCAGGGCACCACTAAAAACAGGA ATCTATTAGGAGCCTTCTGGGAAAAGCTTTCTGAGGATGATGCAAAGGAGATTTTTTCATTCAAGGATGTGGCACTGGAGGAAGTATCTGGATCTTCAAT TATTAAGTCGCTGATGACTCTTAACCGAAAACAGGGGTTATGTCCTCTTCCACAGTACTGTTTGCGAGCTGGTACTACTCTTCTGGATTTAATCCAAGGG AGATTTCTGTATCCGTTATCCTCAGAGGACTTGTTCAGCATCCTTGATGATGCCAGCGAAAAAACGTTCCTGTGCGGAGCAGCAATCTCCATGCAGAAGT ATATTTTCGAAGGAGAAGCTGCTAAAAACGGTCTTGAAACGAAGAACATAGTTGCATGTACCAGCTTTTTGGTGGAACAGAAGTTGGTTAAGGCATGGCT TGCAGACAAAGATGCTGAAGCCCTGAGGTGCCAGAAATTGCTTGTTGAGGAGGAAGAAGCTGCCCAAAGAAGGCAAGCTGAACTTCTAGAGCGGAAAAGG CTAAAGAAGCTCAGGCAGAAAGAGCAGAGAGCCAAGGAGCATCAACAAGAGGAGAAAACCGATACCTTGGAGGAGCCAGCTGAACTACCTTGCTCAACTG CATGTAGTTCCAATTCTCACGACATGGAGATTCCTGCAGATCCTTTTTCGTCGTCTTCTGAACCTATACAACTTGCAGATATAGAAGATGGAGATTTCGA TTTAGAGGGTCAGATTGGGTATAGTAATGGAGGAGGAGCTGGCAGAATTTACTATCCGGCAATGGGAAATTACCGCAGAGGCCGGTGGCCTCAGAGATTG CAATGGAATAGCCACACTCCGAATGGATTCCTCAGGAAGTGGAGCAGAAAGAGTAGAGTAGTAGAGTATGGTTGGGAGACTTCAAAACCCAGAATAGAAA AATTAGTGATAAGCCAACAGCCAGAAGATGATAATGCCAAGAGACGCGAAGTTCTGATCGGTTCGATCTCGGTTGCACTTCGTTCGGAGGACAGTAACGA CAGGGAAGTTCAGAGGAAGAACTCGCGGGATACAGTGAAGCAATGGAGGCCTGTGAGCCGAAACGGTACCAAAGGCCAAGCGCAAGAAGACGAAATCGCT CCTAGAGAATCTTCTCCCGACGAGAATCTTCATCCTAAGAGGTTCCAGTTTTCCTGCCAGGCGGCAAAAGCTTTTCTAGCCGAGAGGTGGAAGGAAGCCA TGGCAGCCGAACATGTGAAACTGGTCCTAGCATTAAATCCTGGTAAGTATGCTCAACGAAGTGGCAATGTAGAGGAAACGCTAGTCGACGAATCATCGTC GTAG
AA sequence Show only first row Show all	>Lus10038856 pacid=23150368 polypeptide=Lus10038856 locus=Lus10038856.g ID=Lus10038856.BGIv1.0 annot-version=v1.0 MPVVKQKAGNTTDVMKSEEGNGSLDTFIRQAMGKEPLLSFPRTNDNPVQWIQLLQALDQQDGPGWPLLTPLKVQMQKCDKCSREFCSSINYRRHVRVHHR LKKLDKALPVMSLLLNESILKDVLLGQGTTKNRNLLGAFWEKLSEDDAKEIFSFKDVALEEVSGSSIIKSLMTLNRKQGLCPLPQYCLRAGTTLLDLIQG RFLYPLSSEDLFSILDDASEKTFLCGAAISMQKYIFEGEAAKNGLETKNIVACTSFLVEQKLVKAWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKR LKKLRQKEQRAKEHQQEEKTDTLEEPAELPCSTACSSNSHDMEIPADPFSSSSEPIQLADIEDGDFDLEGQIGYSNGGGAGRIYYPAMGNYRRGRWPQRL QWNSHTPNGFLRKWSRKSRVVEYGWETSKPRIEKLVISQQPEDDNAKRREVLIGSISVALRSEDSNDREVQRKNSRDTVKQWRPVSRNGTKGQAQEDEIA PRESSPDENLHPKRFQFSCQAAKAFLAERWKEAMAAEHVKLVLALNPGKYAQRSGNVEETLVDESSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10038856 [exp]	0	1
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	16.8	0.7992
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	25.0	0.7145
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	25.7	0.7906
AT5G58510			unknown protein		Lus10031287 [exp]	30.3	0.7807
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	30.8	0.7671
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10007970 [exp]	35.2	0.7808
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	38.7	0.7587
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	50.1	0.7532
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	54.2	0.7747
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	60.2	0.7091

Compare expression of checked genes

Lus10038856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.