Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 592 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 362 / 5e-115 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 310 / 3e-94 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 249 / 1e-72 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 247 / 2e-71 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT4G08500 240 / 2e-69 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 232 / 5e-66 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G12020 238 / 1e-65 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G08470 222 / 4e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 223 / 6e-62 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014976 [exp] 1207 / 0 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 814 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 773 / 0 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 616 / 0 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 613 / 0 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 378 / 1e-115 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 333 / 2e-104 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10019635 [exp] 325 / 6e-100 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 319 / 1e-97 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146700 [exp] 785 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 772 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 662 / 0 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 654 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 392 / 1e-126 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 391 / 5e-126 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G039800 [exp] 323 / 6e-100 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 322 / 4e-99 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 292 / 5e-87 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 288 / 1e-85 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10038858 pacid=23150342 polypeptide=Lus10038858 locus=Lus10038858.g ID=Lus10038858.BGIv1.0 annot-version=v1.0 ATGCCTTCGTGGTGGGGGAAGTCATCATCCAAAGAGCTGAAGAAGAAGAAAGGGAGCAAGGAGAGTTTCATTGACTCGTTGCATCGGAGATTCAGAAGTA CGTCCGATGGTAAACTAAAGTGCATTGCAGTAGTCTCTCGGCGAAGCTTGAGCGACACTGTACCAGGAGGAAGAGTATCGAAATCTCGACCAGAGTCTAG ATCACCGTCTCCTTCCAAGCATGTGTCTAGGTGTCAAAGTTTCGCCGAGAGTACTAATTCGCTACCACTTCCTCTTCCCGGAGTAGTTCATCCTGCAGCG GTGGTACGTGCGAATTCCGAGCTTAGTGCAACCGTGAAACCGAGGTTGGAGAAAAGATCCAAGTCGTTCTTGTTTCGTCCTTTGCCTAGACCGACATGCA TCGGCAATAATAGATCAAATGAGGATGATTTAGATGGAGATTTGGTCACTGCTTCGGTTTCAAGTGCAAGTTCAATCGACATTGATGAGTTGGCTGATCT TAATCAACCCAGTGGGGTGAGCAAGGTTATGAAGCCAAGAGAAGTAAAGAAACCAGTGAAGCTCTCTTTGTCGAATAATGGTGCACCCGACAGTTCAATG TCAAGTCCTTCGAGAAGTCCGCTAAGATGTTTCGATATCAGCTTGCTTGGGTCAGGACACTGTTCTAGTCCGGGATCAGGTTGCAATTCGGGACAGAATT CGATTGGAGGGGAAATGACAGGGCAGTTATTTTGGCAACAAAGCCGAGGTAGCGCTGAATGTTCTCCTATACCTAGTCCTCGAATGACTAGCCCGGGACC CGGTTCCAGAGTTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGTGGTGCAACCATCGAGTCACAGACGAGTTGGCCCGAAGATGGGAAAAAG CAAAGCCATCGTCTACCACTTCCTCCAATTACTATTTCGAATTCCTCTCCTTTCTCTCATCCCAACTCCATGGCCACTTCTTCTTCTGTGCCAAGGAGTC CAGGAAGGGCAGAAAACCCGGCGAGTCCTGGACCGCGCTGGAAGAAGGGGAAACTGCTCGGTCGTGGGACATTTGGGCATGTTTATGTTGGCTTTGACCG GGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACTCTGTTTTCAGATGATGCCAAGTCAAAGGAGAGTGCCAAACAGTTGATGCAGGAAATTTCTGTA TTGAGCCGGTTACAACATCCAAACATCGTGCAATATTATGGATCAGAACAGGTCGATAACAGACTTTACATATATCTCGAGTATGTGTCTGGTGGATCTA TCAACAAAATTCTCGCGGAGTATGGTCGGTTGGGTGAGTTAGCAATTCGCAGTTACACCCAGCAAATCTTGTCAGGCCTTGCATTTCTCCATTCCAAAAG CACTGTACATAGGGATATAAAAGGAGCAAACATTCTAGTGGATCCAAACGGGCGTGTAAAATTAGCAGATTTCGGGATGGCTAAGCATGTTTTAAACTCC TCGAATGGGTACAACCTTGCTGTGGATATATGGAGTCTTGGATGTACTGTTATAGAAATGGCCACAGCTAAACCACCATGGGGCGAGTATGAAGGGGTTG CTGCTCTGTTCAAGATTGGAAACAGTAGAGATCTCCCTGAAATTCCGGATCACCTCTCAGATGATGGAAAGGACTTTGTTAGGCAATGCTTGCAAAGGAA TCCATCACGGCGTCCTTCGGCTGCTCAATTATTGGACCACCCGTTCGTCAGATCTGCTGCACCCTTAGAAAGATTCGCCCTTTGCCCTGATTCTATCGAG CCACCTCTTGGTGTGACGAATGGAGTGAAAGATCTGGGAATTAGTCAAGCTAGAAACTTCTCTACCTTGGATACCGAAGGACTTGCTGTTCATTCGGCGA GAGTGTCGAGAGCCTCGAAGCGAGGTTTTTATGCCAGTGACATCCACATCCCAAGGAACAACATTTCGTGCCCTGTCTCGCCCGTCGGGAGTCCTCTTCT GCGTTCAAGGTCTCCGCACCATCTCAACGGAAGAATATCTCCATCGCCTATATCCAGTCCGAGAACCACCCCGTCAACACCTCTTACCGGTGGCACTGGT GCAATTCCTTTCCATCACATGAAGGGTTTTGCAAACATGTTGAATGGTATGTATCCGAATGGCCATTCGTATAATAACGATGCTGCTCCTGACATGTTCC AAGGAATGCAGCGCAACATCTTGTCTGAGCCTGGATGTGAAACTTACGACGGGCAATCAGTCTTGGCTGATAGGGTATCTCGCCAGCTTTTGAAGGATCT TACGAAGATACATTCGCCCTTGGACATCAGCCCTAAATCACCTTTGCCCAATTCACCTTTGCCCAATAGGAACAATGGTGTTTAA
AA sequence Show only first row Show all	>Lus10038858 pacid=23150342 polypeptide=Lus10038858 locus=Lus10038858.g ID=Lus10038858.BGIv1.0 annot-version=v1.0 MPSWWGKSSSKELKKKKGSKESFIDSLHRRFRSTSDGKLKCIAVVSRRSLSDTVPGGRVSKSRPESRSPSPSKHVSRCQSFAESTNSLPLPLPGVVHPAA VVRANSELSATVKPRLEKRSKSFLFRPLPRPTCIGNNRSNEDDLDGDLVTASVSSASSIDIDELADLNQPSGVSKVMKPREVKKPVKLSLSNNGAPDSSM SSPSRSPLRCFDISLLGSGHCSSPGSGCNSGQNSIGGEMTGQLFWQQSRGSAECSPIPSPRMTSPGPGSRVQSGAVTPIHPRAGGATIESQTSWPEDGKK QSHRLPLPPITISNSSPFSHPNSMATSSSVPRSPGRAENPASPGPRWKKGKLLGRGTFGHVYVGFDRESGEMCAMKEVTLFSDDAKSKESAKQLMQEISV LSRLQHPNIVQYYGSEQVDNRLYIYLEYVSGGSINKILAEYGRLGELAIRSYTQQILSGLAFLHSKSTVHRDIKGANILVDPNGRVKLADFGMAKHVLNS SNGYNLAVDIWSLGCTVIEMATAKPPWGEYEGVAALFKIGNSRDLPEIPDHLSDDGKDFVRQCLQRNPSRRPSAAQLLDHPFVRSAAPLERFALCPDSIE PPLGVTNGVKDLGISQARNFSTLDTEGLAVHSARVSRASKRGFYASDIHIPRNNISCPVSPVGSPLLRSRSPHHLNGRISPSPISSPRTTPSTPLTGGTG AIPFHHMKGFANMLNGMYPNGHSYNNDAAPDMFQGMQRNILSEPGCETYDGQSVLADRVSRQLLKDLTKIHSPLDISPKSPLPNSPLPNRNNGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	0	1
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	1.4	0.9350
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	2.2	0.9210
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	3.5	0.9287
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	4.5	0.9240
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	4.6	0.9168
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	5.7	0.9322
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	6.5	0.9186
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	8.1	0.9040
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	8.7	0.8979
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	10.2	0.9008

Compare expression of checked genes

Lus10038858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.