Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 555 / 0 Myosin heavy chain-related protein (.1) AT5G41140 413 / 2e-129 Myosin heavy chain-related protein (.1.2) AT1G63300 283 / 3e-81 Myosin heavy chain-related protein (.1) AT1G22060 119 / 5e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014980 [exp] 1514 / 0 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 1011 / 0 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 1009 / 0 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10024517 [exp] 288 / 1e-82 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 280 / 7e-80 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 246 / 9e-68 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 214 / 3e-57 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 121 / 2e-27 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 120 / 4e-27 AT1G22060 978 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143800 [exp] 793 / 0 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 489 / 1e-156 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 441 / 7e-139 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 341 / 2e-102 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 122 / 5e-28 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 120 / 2e-27 AT1G22060 1031 / 0.0 unknown protein Potri.008G029800 [exp] 81 / 5e-15 AT1G22060 117 / 5e-26 unknown protein Potri.006G120400 [exp] 76 / 1e-13 AT1G22060 121 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038860 pacid=23150438 polypeptide=Lus10038860 locus=Lus10038860.g ID=Lus10038860.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCATGGAGGAGCAAGGAGAAGTTCAAAGCTATATTCCAGCTGCAGTTTCAGGCAACGCAGGTGCCGAAGTTGAAGAAGCCAGCTTTGACGG TGGCTTTGGTGCCGGAGGATGTGGGGAAGCCGACATTCAAGCTGGAGAAAACTGCAGTCCAGGAAGGGATCTGCTTATGGGAGAATCCTGTATATGTAAC GGTGAAGTTCGTTAGGGAGCCCAAAACGGGGAACCTGCACGAGAAAATATATCATTTCATCGTCGCTAGTGGATCGGCCAAGAAAGATTACCTTGGGGAA TCTTCAATCGATTTTGCAGATTTTGCAGAGGAGATTGAGCCAGTGACCATCTCTCTGCCACTGAAGTTTGCGAATTCCGGTGCAGTTTTACATATAACAA TTCGGAAAGTTCAAGGAGGAATCGAGCAAAGGGGTAGTAATGGAGAAGCAACAGTACCTGAGGATGGAAGGTCGATGAACCGGTTGAGTATTGATCGGCC AAGCATAGATGGGAAGAATTTTGTAGAAGAGATAGACGACAGCTACAGAACATCTACTGACAACCTCAGGTCACTTGCGAGACAAAATGCGATGCTTCAG AGGGAAGATAGCGATGTTGAATCAGCAACAAAATATCACCAACACCGAAGATCTGGAACAGAATGGTCAACGGGGTCAGGCTCAGATGGAAGTCTGGTCG ATTCAGCAAACAGCCCTGGAGAGAATGTTCCAAGACGGTTAAATGAAGCTACAGATGAATCCACTCAGAAGCTTAAAAGCGAAATTCTCAGTCTAATGCG ACAATCAGAGCTGTCTGAAATGGAATTGCAGACCCTTCGGAAACAAGTAACGAAAGAGAGCAAAAGAGCACAGGACTTGTCAAGAGAGAATATGAACATC AAAGAGCAGAGAGATGCAATCCAAAGAAAATGTGAAGAGCTTAAGTATTCTGTAGAAGCAGAGGCTCTGGACCGAGTACGAGTAGCACATGAAGGGTCAA GGGTTAAGATAGAAGAGATGAGAAAGGAGCTTAGACATGAAAAGGAGTTGAAGTTCAACCTTGAGTCGCAATTACAGAAAATGCAAGAATCCAATTCGGA GTTGATTCTAGCAGTGCAGGACCTTGATAATGTGTTGAAGGAAAAAGACGTGGAAATATCTGTTCTTTCCAGCAAGCTGGAATCAAGTGAGCAAGATAAA GAGATCCAGTGTCAAAAATGCAGATGCAGTACAGAAAGCAGTGAATTAACTGGAGATCAAGATGATACCACTAGCAATGAAGTATACTTGCTTAAGCAAC AGACAGCTGATCTGTCTGATGAAATTGATGCCTACAAAGAAACCAGGGAAAGGCTGGAGAAGTACATAGAGCAATTAACTCACGATTTTGAGGATTTAAA ACAAGAAAACCATCATATATCCGATGAGTTGAAGGAGAATCGTCAACAACAATTGCAGGCACAAAATGAACGATCCCAGTATATGGCCGCTATTGAGGAA CTTGAATTGCAGCTGCATGGACTAGAAAGGGAACTAAGAGAACAGACACAAGAACAGTCTATATCCTTGCTCCATATAAATGAACTTGAAGGTCAAGTAA AAGAGTTAGAGAAGGAACTCGAGAAGCAGGCAATGGAATTTGAGAAAGACCTGGATGATATGACTCACACCAAAATTGAGCAGGAACAAAGAGCCATTCG TGCAGAAGAGGCCTTGAGGAAGACGAGGTGGAAAAATGCCAGCTCAGCAGAGCGACTCCAGGAGGAATTAAAAAAGGTTTCACTGGAGATGGAAGATAAG ATTGATCAGAATGAGAAGCATATGGCAAATGCTGTCGCAGAATCAGAGAAGCTCAGGTTGCAGAATAGAGTCTTGGAAGAGAAGCTCACCAAAGCTAATG AAGAGATCGCACGAATTAAAGACCAGACCAAAGTAAGAGTGGAAGAACTGTCAACTCAACTTGCTCTGAAGACTAAAATGGCAGAAGAGATATCATTGGA AGTAGACGAGAAGACAGCACAACTGCAAAAAATGCAGAAGGAAGAAAAGGACAGGCAGGAATCTTTTTCAAGGGAAATTCAAATGCTCAAAGAAAAAATA GAAATACTCACAGCCGACGCCTCCAGTCAACCAGGAGAGAAATGGAAGGATGAGCCGAAACAAACAAAGGCAGCACTTGGAGAAACAGCACTGCAACGAG ATAGATGGGGTAAGGAGAAAAAGGAATTGGTTAGGAAGTACGCATCAGCTAAGAAAGAAACAGAGAAGGTTCTTAAAGAGTATGAAAACTTGAGGTTAGT GAAGGATGAAAGGGACACAACGCTGAAGAGGCTACAGTTGGAAATAGAAGGGCTCAAAGAGCAACATAATAAGTTAACACATACCCTGTCAGAAGACAAA TTGGAGAAAGAGAACCTGCGGAAGCAAATAGTTCAGCTAAGGGAAGAATCACTTCACTCTAATAGGGGAACAGAACAAGGGGCTGTTCACAAACGGAATG CAAAGACATGCTCAAAGCAACAACAAGACAACGTTAACCTGACACAGATGCAGGATGAAATGGCACAGCTCAAGGAAAGGAATAAACGTATGGAAAGTGA ATTGAAAGAAATGGAGGTGAGATATTCAGATATAAGCCTAAAATTTGCAGAGGTAGAAGGAGAAAGGCAACAACTGGTCATGACTGTACGAAACCTGAAA AAACGGTAA
AA sequence Show only first row Show all	>Lus10038860 pacid=23150438 polypeptide=Lus10038860 locus=Lus10038860.g ID=Lus10038860.BGIv1.0 annot-version=v1.0 MFKSWRSKEKFKAIFQLQFQATQVPKLKKPALTVALVPEDVGKPTFKLEKTAVQEGICLWENPVYVTVKFVREPKTGNLHEKIYHFIVASGSAKKDYLGE SSIDFADFAEEIEPVTISLPLKFANSGAVLHITIRKVQGGIEQRGSNGEATVPEDGRSMNRLSIDRPSIDGKNFVEEIDDSYRTSTDNLRSLARQNAMLQ REDSDVESATKYHQHRRSGTEWSTGSGSDGSLVDSANSPGENVPRRLNEATDESTQKLKSEILSLMRQSELSEMELQTLRKQVTKESKRAQDLSRENMNI KEQRDAIQRKCEELKYSVEAEALDRVRVAHEGSRVKIEEMRKELRHEKELKFNLESQLQKMQESNSELILAVQDLDNVLKEKDVEISVLSSKLESSEQDK EIQCQKCRCSTESSELTGDQDDTTSNEVYLLKQQTADLSDEIDAYKETRERLEKYIEQLTHDFEDLKQENHHISDELKENRQQQLQAQNERSQYMAAIEE LELQLHGLERELREQTQEQSISLLHINELEGQVKELEKELEKQAMEFEKDLDDMTHTKIEQEQRAIRAEEALRKTRWKNASSAERLQEELKKVSLEMEDK IDQNEKHMANAVAESEKLRLQNRVLEEKLTKANEEIARIKDQTKVRVEELSTQLALKTKMAEEISLEVDEKTAQLQKMQKEEKDRQESFSREIQMLKEKI EILTADASSQPGEKWKDEPKQTKAALGETALQRDRWGKEKKELVRKYASAKKETEKVLKEYENLRLVKDERDTTLKRLQLEIEGLKEQHNKLTHTLSEDK LEKENLRKQIVQLREESLHSNRGTEQGAVHKRNAKTCSKQQQDNVNLTQMQDEMAQLKERNKRMESELKEMEVRYSDISLKFAEVEGERQQLVMTVRNLK KR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10038860 [exp]	0	1
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	5.8	0.7538
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	6.2	0.8478
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	6.2	0.8360
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	12.1	0.8169
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	15.8	0.8117
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	17.3	0.8166
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	19.9	0.7760
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10019432 [exp]	22.1	0.7927
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	22.7	0.8104
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	23.5	0.8028

Compare expression of checked genes

Lus10038860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.