Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52290 422 / 2e-124 SHOC1 shortage in chiasmata 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014981 [exp] 2366 / 0 AT5G52290 431 / 1e-127 shortage in chiasmata 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141100 [exp] 960 / 0 AT5G52290 506 / 2e-154 shortage in chiasmata 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038861 pacid=23150570 polypeptide=Lus10038861 locus=Lus10038861.g ID=Lus10038861.BGIv1.0 annot-version=v1.0 ATGCGAACTCGATTCCTGAACATAGACTACTTCAGCTCCCCTCCGCCTCCTCCTCCTTCTTCTCCGTCCCTCGCAACCCTAGATTTCGTCGAGCTACCGG TCCCTACCTTCTCTCATCCGCATATCTTCACCGTCGAGGACTGTTTCCATGGCCTCGAAGAAGTTGCTGCCGTCTCGCTTGAGATCGAGAAATTGCCTAT CGAAACAGCTCTATCGAAGTTCATCGCGGCCGTACTGCCTGAGGTGATCGATGTTGACGTTCCGGAGCTCGAGGACTTCTCCGCAGCCGAGCATGGGACC TTCGTCCTCGGGAGTGAACAGATCGTGAATGGTGATGGCTGCAGCATGGCTGATAAGAGTACACAAGGTGGTGAATTCATCCAGTTTGAAGTACCAGAGC TAGATGTGTTCGTGGGAGGCAGACACCCATCTGTAGATGGTTTGCAGAGTCTATCTGAAGTTTCACACATTGAAAATAATCAGGACTTGCCCTGGTCAGT GCTTAAAACACAACATTTGCAGGAGATTCACGAGTCCTTTTATTCAGAAGCTGAAGTATCCGTAGAGTTTGACATCAATCAAAATATTCCCGATGGTCAT GAAGATGATGGTTCTATCCAGATGAAAAATGCGTCAGATCATGAGTTATTCCCTGCTTTAGAGGTCAACAAAACAAATCTTAGAACCTTCACAGACTGCT ATATTGAACGACGGTTCCTATCATTTCTAGAAAACGTGGAAATCCAGGTTCCCAGTAATGAGCTTGAGGATTTTCGATCCTTGAAGGGTGATATCCTTGA GGTTCCCACGGACCATTGTCTATCAAAGGAACGCCTCAATTCCGATATGGCATCCTTGGATTCAGCTTTTGTACTGGACAATATAAGCATTACAGAAGCT GCATATTGTGAAGAAGACTGCAATCCAGCAGAGCCAATTATTTTCCATGAACCGGAGTTCATTGGAACACATTCATCTAAAGTTGTGGAGAGCTTCTTCA ATATGCAAAAGAGTTGTGAACCGGGAATAAGTGACCTGATGATCCACAAAGAGTTGAACTCCAGGAGTTTTAATGAGTTGGTTGTTTCTTCTGAGCTGGC CCTAATAGACGACAGTTTCAGAACATTGCCGGTACCTATTCTTTCTGACCATGATAGGACAAGATCAATGCATACCATTCTTGGAGGATTACTCATGGGA CTAAAGGAACAGCCTCTTTCTACATCTGATAATATCTACTTGGATTGGCATTTTCTGGATGCTGACATATGCAACTGTAAAATTCCTTGTCACCGTCTTA TTGTGGAGGATTTGGATTCTCACAGCACAAATCTTGACATGGTATCTCTTGATGATGGAAAGCCGATGCTTGATTTTATTCTTTCTGATGATACTTTGTT CAAGATGGAAGACCATAAGGAATCACTGGATGTTCTTCCTGAAGGCTTGCATGACTCTTCAAGTACGTGCCCGGGTGGCAGATTTCCAGAATCAGTGAAG CTTCGGCCATTAGATGATGAAGTTTGCGGGAAGGCTTCAAAGTTATTCAAGTCTATGTCGCAGTCCAATGATCTTGAGTTTTTCTTGAATCCTGGAAAAG CTATTGCTAGGGAGAGAAGTAGATCAGCAGCTGAGGCGTCTTATATAAATCCTCCACTTCCCGAGAAGAGAGTGCCTCATCTGGGAGAAAATGTGAGCCA ACAGTGTCTGGATCCACAGTTGAAATCCATACCTGTGGTGCGTATGCTCGAGAAAACATCTGCAGAAGCATCATATAAAGTAGCCAAACAGAGTCAATGT GTTCCCAGTCCAACTAAATCTGAGAGTACTCAAGGAAGGAAGGTTTCTGGCCCTGAGACTGTCATTGTCGTAAATACTCAAAACTTTGGTAAGGAAATGA TAGTATCCAGAAGAAGTACATACGAAAAGCTTCTAGCAATGGAGAAAGAAGGAACAGAAGTCGTTGAACGTGACATAGATCTCCCTGTAGATGTTCTGAT TAGTTCTGCCATGTGCCTAGCTTGGTACGACTGTAAATCTATTAGAAAGCAAGCGACTAATTTGGGTGAAGCTTCGTCATGCTTTCATTTGTGCATCAAC AATATTGCTACGCAAGTTCTGACTCTGCTGAGTTTCACTTTCAAGGGCTGCATTCTGGTATTTGAGGGGGGAAGTGACTTTCTTTCTGCCGTGATGGAAT CTTCAGATGGACTTTATGCGGCAGCAGCAGGCCTTGGGATAGATTTACAGATGTTCTGTTCATATTCATCAGAGTTGACTGATGACATAATTTTGAGCAG TGTTTTCCATTCAACCAAGGAGTGCAGGAGCAAATGTCCTGAAATGCCCGAATCAGAAACTCTTGCAGAATCCTTCCTCACCAAATTTCCTTCAATTAAT CCGTTGACAGCTCATGCTATACTGTCATCAGAAGGGACGCTGATCGACTTTCTTGAGTGGTCACATGAGCATAGGATCCTTGCGGTCCAGCAGCACCATA TTCCTGAAGAAAGCATTGCACTCTTTAGTTCCTTGTGCAAATATGGGGCGAGGGAGGATTCTAAATCTGCAATGACAGACTCCATCTCCTCTGTTTCAAC TGGAGCAGACTCGGATAAACATCATCTGGGATTTGATTCTGAAGGGAAGGGGAGGAAATATGCCCATAGCCCTCAAAATATGGACATATGCTTGGATGAC GAGTGGCACTTTGAGCCAGCAGAAAATTCTACCAAGAAAAGAAATCTTCCACCTGCAGCAATGCTACCAAAGGATCATTGGATGCCTGATGTGAATGACA TCCTTGATGAGTTGAAACAGCCTATCTCAAACCTGACAGACTTTCTTGAACAAGAATCAAATGCTGCTACGGCAGTTGATTTTTCCAGTATGTCCGAGCA ATTTGGTGAAATGGAAATGGATAGAATTACTAACAAAGGCAAATCATTGAATAGGTCCTTTGATCAAAACCGGGGATGTGGTGTGCCTGTCAGGAAGAGG TTGAAGAAGTACAATACCAGTATAACTGAGAATCTGCATAAGGACTTCAAGGGAGTTACTATTGACCTTACAAACAGTCCCTCACCAGATAAAAAGGTTC CTTCACTGACAAATTCCTCAGATATTTCCTCATGGCTGTGTGAAGAAGATCAAGGTTTCACCACTAAACCTAAAGCTGCTCGAAAACTGTCATATAATGG GAATAGTCTGTTCACTTTCCCAACTACGAGCGAGATAAATTCTGAACCTGACCCGTGGCCATCCTTTAAGGGTCATGGACGAAGTTCGCAGGACAATCAC GGGTTCTTTGATTTCAATAATAACCAGGAGAAAGTAACTTCAGAAGTACGGAATAAAGTCCTGACAGAGATTCCAGTTCACCGAAATGCTGGAACTCCTG TACGGTTGGCTATGAAAAAGATGCCACATTACAGTCCAGCATCACTCTCAAAAAACGTGCATTCTTCTCAGCCAGAATGTGGTGAATCGCCATTTTCTAA AGCCATTCGTTCCTCTCAACCACAGGCTAGTTCTCCATGGACAATTGAGTTTCTTAATAGAATCAGAGAGAAGTCCAGATTGCGGAAGCTTTCCTTGCCA AATGATGCATCTCCCGCCTTTACTGGCGCTACAACTAATGCATCTAAAGCTACCAAGACAAAAAGCCCATCCGTCCTAGACTATTTCAAGTACCAAGGTG GCCGCACTCCTCAGAGAAAACCTGGACCCATGAAGCAGAAGCTACCTATCCGACCATCAAGCGCATCAAGAACTGAAAGAGTTGGAGCATCTCTTTCTCC AATACGCACACCCATTGACAGGAGGACAAAACAGACTCTGTCTTTTGAACCGAATGGTAGTGGAAGCCAGACTAAGCTAGTATGGACTGACGGTGGTGCA CGACCTTTGAGCAAAAAGATGAGGAATTTCTAA
AA sequence Show only first row Show all	>Lus10038861 pacid=23150570 polypeptide=Lus10038861 locus=Lus10038861.g ID=Lus10038861.BGIv1.0 annot-version=v1.0 MRTRFLNIDYFSSPPPPPPSSPSLATLDFVELPVPTFSHPHIFTVEDCFHGLEEVAAVSLEIEKLPIETALSKFIAAVLPEVIDVDVPELEDFSAAEHGT FVLGSEQIVNGDGCSMADKSTQGGEFIQFEVPELDVFVGGRHPSVDGLQSLSEVSHIENNQDLPWSVLKTQHLQEIHESFYSEAEVSVEFDINQNIPDGH EDDGSIQMKNASDHELFPALEVNKTNLRTFTDCYIERRFLSFLENVEIQVPSNELEDFRSLKGDILEVPTDHCLSKERLNSDMASLDSAFVLDNISITEA AYCEEDCNPAEPIIFHEPEFIGTHSSKVVESFFNMQKSCEPGISDLMIHKELNSRSFNELVVSSELALIDDSFRTLPVPILSDHDRTRSMHTILGGLLMG LKEQPLSTSDNIYLDWHFLDADICNCKIPCHRLIVEDLDSHSTNLDMVSLDDGKPMLDFILSDDTLFKMEDHKESLDVLPEGLHDSSSTCPGGRFPESVK LRPLDDEVCGKASKLFKSMSQSNDLEFFLNPGKAIARERSRSAAEASYINPPLPEKRVPHLGENVSQQCLDPQLKSIPVVRMLEKTSAEASYKVAKQSQC VPSPTKSESTQGRKVSGPETVIVVNTQNFGKEMIVSRRSTYEKLLAMEKEGTEVVERDIDLPVDVLISSAMCLAWYDCKSIRKQATNLGEASSCFHLCIN NIATQVLTLLSFTFKGCILVFEGGSDFLSAVMESSDGLYAAAAGLGIDLQMFCSYSSELTDDIILSSVFHSTKECRSKCPEMPESETLAESFLTKFPSIN PLTAHAILSSEGTLIDFLEWSHEHRILAVQQHHIPEESIALFSSLCKYGAREDSKSAMTDSISSVSTGADSDKHHLGFDSEGKGRKYAHSPQNMDICLDD EWHFEPAENSTKKRNLPPAAMLPKDHWMPDVNDILDELKQPISNLTDFLEQESNAATAVDFSSMSEQFGEMEMDRITNKGKSLNRSFDQNRGCGVPVRKR LKKYNTSITENLHKDFKGVTIDLTNSPSPDKKVPSLTNSSDISSWLCEEDQGFTTKPKAARKLSYNGNSLFTFPTTSEINSEPDPWPSFKGHGRSSQDNH GFFDFNNNQEKVTSEVRNKVLTEIPVHRNAGTPVRLAMKKMPHYSPASLSKNVHSSQPECGESPFSKAIRSSQPQASSPWTIEFLNRIREKSRLRKLSLP NDASPAFTGATTNASKATKTKSPSVLDYFKYQGGRTPQRKPGPMKQKLPIRPSSASRTERVGASLSPIRTPIDRRTKQTLSFEPNGSGSQTKLVWTDGGA RPLSKKMRNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	3.2	0.9297
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	4.5	0.9234
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	4.9	0.9235
AT1G04650			unknown protein		Lus10011755 [exp]	8.1	0.9218
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	9.2	0.9239
AT2G46980			unknown protein		Lus10038019 [exp]	11.7	0.9178
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	12.7	0.9165
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	15.7	0.9118
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	16.9	0.9000
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	17.1	0.8720

Compare expression of checked genes

Lus10038861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.