Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52300 59 / 1e-08 LTI65, RD29B RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014982 [exp] 226 / 1e-64 ND 47 / 4e-05 Lus10007012 [exp] 46 / 7e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141300 [exp] 101 / 5e-22 AT5G52300 164 / 2e-43 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07918 [flax] [poplar] CAP160 CAP160 repeat
Representative CDS sequence Show only first row Show all	>Lus10038862 pacid=23150605 polypeptide=Lus10038862 locus=Lus10038862.g ID=Lus10038862.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGCCATGTCCACGAAGGCGAGGAGCACCCTCATGGGGTGAAAGGTGTGCTGAAGAAGGTGAAGCGGAAGGCTAAGAAGGTTAAGGAAAGCC TTACCGGACACGGCGGCCATCACGAACATGATCATGGAGATCACGATCATCTTTGCCATGTGCCCGATGATCATGATCTCGACGAGGAGGAAGACGATGA TGAGGATGAAGAGATGGTTGAAGATACCGCCGTTCATGGAGCTTCGGGGCATGCAGCTGCTGTAGCTGTTGGCCTTGGGAGGCGTCCCACCGGAAAGTCG GCGGCAATGCCACTAGGCTATTCCGGCGGCGGTGATCCCATGAAGATGTCACCTATGGAGGCAGAGCAAAACAGGGCAGGAGGCATAGGAGGACATCACA AGCTGACCGATATAACCGAAGACCCACGAGCTCCGTCTAGCAGTCCGATGACTCATGTAACATCCGATCAACATCCCAAAGGTAGTGATCACCAGATGCT AGCTAGACCGGCGTTCGATACTCCGATAATGACCGATCAATATCCCAAAGGCGGTGACCAACCGCGAGCTACATCAACATTAATGTTCGATACTCCGATG GTGACGACAACCGATCAATATCCCAAAGGCGGTGACCAAATGCGGGCTACCACGAAGTTCGATTCTCCGATGATGACGACCGACCAACATCCCAAAGGTG GTGACCAAATGCGAGCTAGGTCGACGCTCAATACTCCGGTGATGACGACCGACCAACATGCCAAAGATGGTGACCAAATGCGAGCTAGGTCGACGCTCAA TACTCCGGTGATGACGACCGACCAACATGCCAAAGATGGTGACCAAATGCGAGCTAGGTCGACGCTCAATACTCCGGTGATGACGACCGACCAACATGCC AAAGATGGTGACCAAATGCGAGCTAGGTCGACGCTCAATACTCTAATGAGGACGACCGATCATCATACCAAAGGTGGTGACGAACGCGCTAGGACCTTCG TCGGCCAACAAGAGAAGGATAGAGGGCACCTTCAAGTCACATTTGACGAGCCATTGGTGGAAGATCCTCATGGGCCGAAAGGCCGGTTTGGTGGTCGTCG GTCACCTCCAAATTATCAGTCGAAAACCATTGATCGAAGCGGCCGAGGAGGAGGAGAAGCTGACGTGAGTCAACTGGTTGACTCATTGGGCAAAGCTAAC ATCTCATCAGGAGGAGAAACAAAACATTCTCCATGTGAAGAAGACTTGTCAGCCAGAAACAGAGCTACGGCCTCTGTTCTACCCACCGGAAGCCACGACC AGTTATCGCCGGAGGCAACTCGTCCGCAGCCGATATCCACCTTCGACGGGCCCAAACACGGCGACAAACTCCAGGTCCATGATCATCATCGTCATCCTTC AACCGACTCGCAGCAGAACCAAAGCAACTACACCAGCAAAATTTCCTCTGCCGCTTCGGCACTGGCCGGCACGGCGATCTCGGCCAAAGACACCGTCGCT TCGAAGCTAGGGTACGGCGGCGAGGAGAAGAGAAACGAGGGTGAGAAATTCTGTATCTATGATCATGACGACGAAGAACAGCATCATCATCCGACTGCCG ATCAGAGTACATACACCGATAAAATCTCCTCCGCTACTTCAGCGATCGCCGGGACAGCTGCTTCCGCCAAAAACGTCGTCGCATCGAAGCTAGGGTATGA CGAAGGCAACAGAAACGACGATCAAACGCGGATCCACAATCCATCTGGCGGAAATTATCATCATTGTTCGACAATCGATCAGCCACAGCAGAATCAGAGC AGCTACACGGATAAGATCTCCTCCGCTACTTCGGCGATCGCCGGGGCTGCAGCCACCGCCAAAAACGCCGTCGCATCCAAGTTAGGGTACAGCACCGGTG ACCGAAACGAAGATCAAACTCATATCCACAATTCAACGGCCGGAGATCAATACGGTCGTCGTTCTACAATTGATCATCCGCCGCAGAATCAGAGCAGCTA TACGGATAAGATCGCCTCCGCCAAAACCGCCGTCGCTTCGAAGTTAGGCTACGGAACCGGCGAAAGAAACGAAGATCAAACTCAGATCCACAATCCCATG ACTGGAGAACACCGTCATCATTCTGCAATCGATCAGCCGCCGCAGCAGAACCAGAACCAGAGCGGCTACACGGACAAGATCTCCTCTGCCGCATCTGCAA TCGCAGGGACAGCAGCCGCAGCCAAGAACGTTGTTGCGTCGAAACTCGGGTACGGCGGCCACGAGCAAGAGGAGGCAGAGCCTCGAAAGAAGCCGATGGG GGTGGTGACGGAGTCGGAGGAAGTGAAGAGGCGGCTGGGGAGCGGCGGGAGGAGGGAGGAAGAGATGGAGGTGGAGGATAGTTCAGTGAGTGTTCCGGCG ACGAGAGGATCTGTCGGGAGGATGGTGAAAGGAGCTGTGGAGTCGTGGTTTGGGAAAGGTGATACCAACAATGGTGGAGATGACGGTGATCATGATCGTT CTAACGTTGATCATCGCCGTCCGTCGTCTGGACAGACCGTGGGTCAGTCTACTGGGACTGAAGGGTTGACAGAATCTGGGGATATTACTGGAGGCAGAGT TCTTCAGGAATCAGGAAACTAA
AA sequence Show only first row Show all	>Lus10038862 pacid=23150605 polypeptide=Lus10038862 locus=Lus10038862.g ID=Lus10038862.BGIv1.0 annot-version=v1.0 MEEGHVHEGEEHPHGVKGVLKKVKRKAKKVKESLTGHGGHHEHDHGDHDHLCHVPDDHDLDEEEDDDEDEEMVEDTAVHGASGHAAAVAVGLGRRPTGKS AAMPLGYSGGGDPMKMSPMEAEQNRAGGIGGHHKLTDITEDPRAPSSSPMTHVTSDQHPKGSDHQMLARPAFDTPIMTDQYPKGGDQPRATSTLMFDTPM VTTTDQYPKGGDQMRATTKFDSPMMTTDQHPKGGDQMRARSTLNTPVMTTDQHAKDGDQMRARSTLNTPVMTTDQHAKDGDQMRARSTLNTPVMTTDQHA KDGDQMRARSTLNTLMRTTDHHTKGGDERARTFVGQQEKDRGHLQVTFDEPLVEDPHGPKGRFGGRRSPPNYQSKTIDRSGRGGGEADVSQLVDSLGKAN ISSGGETKHSPCEEDLSARNRATASVLPTGSHDQLSPEATRPQPISTFDGPKHGDKLQVHDHHRHPSTDSQQNQSNYTSKISSAASALAGTAISAKDTVA SKLGYGGEEKRNEGEKFCIYDHDDEEQHHHPTADQSTYTDKISSATSAIAGTAASAKNVVASKLGYDEGNRNDDQTRIHNPSGGNYHHCSTIDQPQQNQS SYTDKISSATSAIAGAAATAKNAVASKLGYSTGDRNEDQTHIHNSTAGDQYGRRSTIDHPPQNQSSYTDKIASAKTAVASKLGYGTGERNEDQTQIHNPM TGEHRHHSAIDQPPQQNQNQSGYTDKISSAASAIAGTAAAAKNVVASKLGYGGHEQEEAEPRKKPMGVVTESEEVKRRLGSGGRREEEMEVEDSSVSVPA TRGSVGRMVKGAVESWFGKGDTNNGGDDGDHDRSNVDHRRPSSGQTVGQSTGTEGLTESGDITGGRVLQESGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Lus10038862 [exp]	0	1
AT1G27060			Regulator of chromosome conden...		Lus10008730 [exp]	10.5	0.5059
					Lus10031737 [exp]	11.7	0.5893
AT5G36930			Disease resistance protein (TI...		Lus10025497 [exp]	19.6	0.5825
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	20.0	0.5702
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	20.6	0.5795
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	32.0	0.5669
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	36.9	0.5433
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	41.2	0.5570
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	48.1	0.5648
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10008942 [exp]	53.9	0.5459

Compare expression of checked genes

Lus10038862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.