Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60050 536 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G55630 532 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60040 164 / 1e-43 F-box family protein (.1) AT3G16010 146 / 1e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G48810 144 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 140 / 1e-36 unknown protein AT5G65820 142 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 139 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 139 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 139 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014983 [exp] 949 / 0 AT3G60050 534 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027465 [exp] 677 / 0 AT1G55630 569 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039221 [exp] 525 / 0 AT3G60050 452 / 4e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 146 / 8e-38 AT4G01400 570 / 0.0 unknown protein Lus10011464 [exp] 140 / 2e-35 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003424 [exp] 136 / 5e-34 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10015741 [exp] 134 / 2e-33 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 134 / 2e-33 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003427 [exp] 130 / 2e-33 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144100 [exp] 578 / 0 AT1G55630 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G141400 [exp] 364 / 5e-123 AT1G55630 391 / 7e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G180000 [exp] 168 / 2e-45 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050300 [exp] 143 / 1e-36 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G105900 [exp] 140 / 3e-36 AT4G01400 576 / 0.0 unknown protein Potri.009G105600 [exp] 141 / 8e-36 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G032100 [exp] 139 / 8e-36 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 140 / 1e-35 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 139 / 2e-35 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 139 / 3e-35 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038863 pacid=23150712 polypeptide=Lus10038863 locus=Lus10038863.g ID=Lus10038863.BGIv1.0 annot-version=v1.0 ATGAACGTTGTCGCCCTATTAGGTACCAGGCACTCGGTAGTGAGTAGATTCACCTGTATATCAACCTTCTCGAGGAAGCTCTGCGATTACGGCTTTGTTG ATAACTCTGATGACTCAATCGACAACGGCTTCCATTTGATCGAGGACCCTCTCAAGGGAAATAATCCGGATTCCTGTGAATTCGACACCACCAACCGTTT CAACATAATGCATCATCAATGGAGGCGGTCCGGTGATGCCGAACGAGTGATTGAAGTTCTACGGCAAGGCGAGCCTGGATTCGGTATGAAATCGGCCTTG AGTGAGCTGCGTATAGATGTCACATGGCTTCTTGTGAGGGAAGTACTCGTTGGGATCTTGAGGACGGTAGTACATTGCGATAATGACGATAAATCGAGGT GGGCGAAGCTAGGGTATAAGTTCTTCGTTTGGTCCGGTCAGCAAGGGAGGAATTACAGGCACACGACGAGTTCGTATAACTTGATGATGAAGATACTGGC GGAATGCGACGAGTTCATGGCGATGTGGAGAGTGGTTGATGAGATGACTGAGAACGGTTTGCCAACGACAGCACGGACGTTTAACATATTGATTTGTACT TGTGGCGAGGCCGGTTTGGCTCGAAGGGTTGTGGAGAGGTTCATTCAGTCGAAGACGTTTAACTACAGACCGTTTAAGCATTGTTACAATGCAATTTTGT GCTCTCTTTTAGGTGTTCGTCACTATAGGTTGATCGAGTGGGTGCATCGGAGGATGGTGGTTACCGGTTTCCACCCTGATATCTTAACGTACAATGTTGT GATGTGTGCGAAGTATCGGTTAGGAGATCTAGGCGAGGTATGGAGGTTGGTCGACGAGATGGTGAGGAATGGATTCTCTCTGGACTTCCATACGTACAAC ATCATTCTCCATGTACTCGGTAAAGCGAACCAACCCTTAGCTGCGTATAATCTTTTGAACCGGATGAAAGATGAGGGCATCAATCCATGTGTTCTTCACT ACACCACTCTGATGGACGGACTGAGCAGGGCCGGGAATATAGAAGCTTGCGAGTGCTTCTTCGACGAAATGATGAAGGACGGATGTTTTCCGGATGTCGT TTGTTACACCGTGGTAATCACAATGTACGTGGTGGCCAGAGAGTTTGACAAGGCTCAGGCCGTGTTTGATGATATGATCGCGAAAGGCCAGCTGCCGAAT GTGTTCACTTATAATTCGATGATCCGCGGGTATTGCATGGCGGAGAAGTATAAGGAAGCGTGTTCTATGCTCAGTGAAATGGAAGCTAAAGGATGCAGTC CGAATTTTCGTGTGTACAGAACTTTAGTTAGCAATTTGAGGGACGCTGGGAGGCTTCGTGAAGCTCGCGGCGTGGTTAAACAGATGATTAAGAAGGGGCA ATATGCCCATCTAGCTGCAAAGATTAGAGGCAAGAAGAGAAGCTGA
AA sequence Show only first row Show all	>Lus10038863 pacid=23150712 polypeptide=Lus10038863 locus=Lus10038863.g ID=Lus10038863.BGIv1.0 annot-version=v1.0 MNVVALLGTRHSVVSRFTCISTFSRKLCDYGFVDNSDDSIDNGFHLIEDPLKGNNPDSCEFDTTNRFNIMHHQWRRSGDAERVIEVLRQGEPGFGMKSAL SELRIDVTWLLVREVLVGILRTVVHCDNDDKSRWAKLGYKFFVWSGQQGRNYRHTTSSYNLMMKILAECDEFMAMWRVVDEMTENGLPTTARTFNILICT CGEAGLARRVVERFIQSKTFNYRPFKHCYNAILCSLLGVRHYRLIEWVHRRMVVTGFHPDILTYNVVMCAKYRLGDLGEVWRLVDEMVRNGFSLDFHTYN IILHVLGKANQPLAAYNLLNRMKDEGINPCVLHYTTLMDGLSRAGNIEACECFFDEMMKDGCFPDVVCYTVVITMYVVAREFDKAQAVFDDMIAKGQLPN VFTYNSMIRGYCMAEKYKEACSMLSEMEAKGCSPNFRVYRTLVSNLRDAGRLREARGVVKQMIKKGQYAHLAAKIRGKKRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10038863 [exp]	0	1
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	4.0	0.9395
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	4.5	0.9470
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10043344 [exp]	5.9	0.9209
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	6.9	0.9298
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10014983 [exp]	9.9	0.9061
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	11.0	0.9405
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	11.3	0.9421
AT1G12120			Plant protein of unknown funct...		Lus10024611 [exp]	17.5	0.9120
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	19.0	0.9368
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	19.2	0.9381

Compare expression of checked genes

Lus10038863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.