Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18480 452 / 8e-159 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G07010 173 / 3e-50 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014985 [exp] 625 / 0 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031284 [exp] 171 / 7e-49 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031854 [exp] 97 / 1e-22 AT1G07010 290 / 3e-97 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031853 [exp] 52 / 1e-08 AT1G07010 87 / 7e-22 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127500 [exp] 482 / 2e-170 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.009G077900 [exp] 159 / 1e-44 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10038865 pacid=23150278 polypeptide=Lus10038865 locus=Lus10038865.g ID=Lus10038865.BGIv1.0 annot-version=v1.0 ATGGAGGCCGAACAGTCTGATTCCTCCTGCAAAGATCTTCCAAACCTCCTTTCTTCCTTCGTCGACACCTTGATCGATTTCTCAGTCAGCGGCGGTCTAT TCTTACCACCCGAATCTCCCCCTCCCCCTACTCCCGCCGGCGCGGCGGGATTTCAAACTCGCTACCCAGCTCCCAGCCGCCTCATCGCAATCGGAGATCT CCATGGAGACCTGGACAAAACCAAACAGGCATTCCACCTCGCTGGTCTTATCGACGGCTCCGATCGCTGGTCCGGCGGATCCTCCACCGTCGTCCAGGTC GGCGACGTGTTCGATCGCGGCGGAGACGAGCTCAAGATCCTCTACTTTCTGGAGAAGCTCAAGAGAGAAGCCGCCAAGAGCGGCGGCGAGCTCATAACAA TGAACGGCAATCATGAGATCATGAACGTGGAAGCCGATTTCCGGTTCGTGACCCGATCGGGGCTGCAGGAGTTCGAGGATTGGGCGTTCTGGTACCGGAT AGGTCACAAGATGAAAAGCTTATGCTCCTCCGGATTGCCAAATCCGCGAGATATCTTCGATTCCATTCCTTCCTCATTTCGTGGATTGAAACAGGAAGCG GTTTCCGGAATCAGATCGAGAATCGCTGCTTTACGACCCGGCGGACCTGTATCCACCAGATTCTTGACTAAGAACCAGACGGTTGTGGTGGTTGGAGATT CGGTGTTTGTGCACGGCGGATTGCTGTCTAATCACGTGGAATACGGATTGGAGAGGATCAACGACGAGGTGAGGGAATGGCTTAGCGGATCGAGATCATC ATCATCGGCTGCGCCGAGTCATTGCAGGGGAAGAGACGCGGTGGTGTGGCTGAGGAGGTTTTCAGAGGAAGCGCCGGAGAAATGCGACTGTTCAGCGCTT GAGCATGTTCTTGCTACAATTCCTGGAGTGAAGAGGATGATAATGGGGCACACTATCCAGGAAAGCGGGATCAACGGGATATGCGGCAACAAGGCGATCA GGATCGATGTGGGATTGTCGAAAGGGTGCGGGAATGGGTTGCCGGAAGTGTTGGAGATCGACGGGACGAACTCTCAGTTAAGGATTCTGACGGCTAATCC TTTGTATCAGAAGCAGAACAGTTGCAAGGGCAGTATAGAGGATAGTGGTAGGTTACTACAGCAACAAGTAGTTGAAGTAAAAGCTTGA
AA sequence Show only first row Show all	>Lus10038865 pacid=23150278 polypeptide=Lus10038865 locus=Lus10038865.g ID=Lus10038865.BGIv1.0 annot-version=v1.0 MEAEQSDSSCKDLPNLLSSFVDTLIDFSVSGGLFLPPESPPPPTPAGAAGFQTRYPAPSRLIAIGDLHGDLDKTKQAFHLAGLIDGSDRWSGGSSTVVQV GDVFDRGGDELKILYFLEKLKREAAKSGGELITMNGNHEIMNVEADFRFVTRSGLQEFEDWAFWYRIGHKMKSLCSSGLPNPRDIFDSIPSSFRGLKQEA VSGIRSRIAALRPGGPVSTRFLTKNQTVVVVGDSVFVHGGLLSNHVEYGLERINDEVREWLSGSRSSSSAAPSHCRGRDAVVWLRRFSEEAPEKCDCSAL EHVLATIPGVKRMIMGHTIQESGINGICGNKAIRIDVGLSKGCGNGLPEVLEIDGTNSQLRILTANPLYQKQNSCKGSIEDSGRLLQQQVVEVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	0	1
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	3.3	0.8545
AT5G58020			unknown protein		Lus10036615 [exp]	3.9	0.8413
AT4G19950			unknown protein		Lus10038358 [exp]	6.3	0.8425
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	7.1	0.8381
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	8.8	0.8300
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	10.2	0.8242
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	14.3	0.8406
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	15.0	0.8250
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	17.5	0.8157
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	17.6	0.8109

Compare expression of checked genes

Lus10038865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.