Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25550 244 / 4e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) AT4G29820 132 / 4e-38 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014987 [exp] 272 / 3e-93 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10027624 [exp] 116 / 6e-32 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10011944 [exp] 98 / 9e-25 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143300 [exp] 263 / 1e-89 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.012G140301 [exp] 205 / 4e-68 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.006G146400 [exp] 132 / 4e-38 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038867 pacid=23150628 polypeptide=Lus10038867 locus=Lus10038867.g ID=Lus10038867.BGIv1.0 annot-version=v1.0 ATGGTGGTGGGACCTGCGGTGGTGAATACGTACCCACTGTCGAGCTACACGTTCGGCACCAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGATC GCCTCGCTCGCATGAAACTCAACTACATGAAAGAAGGGATGAGGACTAGCGTGGAGGCGATTCTTCTGGTTCAAGAACACAATCATCCTCACATACTTCT TCTCCAAATCGGAAACACATTCTGCAAGCTTCCAGGCGGCCGCTTGAAGCCAGGGGAAAATGGTATACTTTGCTGCCGTTATGTTCGAATCTCCGACACG TTACTATTGAAATCTTACTCTCGACTCCTTTTACTTTTGTCAACAGAAATTGAAGGTTTGAAAAGAAAACTAACGAGCAAACTTGGAGCGAATTCACCTA CTCTTGTGCCTGATTGGCAGGAATGTAAGAAACTATATATAGTTCACTTGTCCGAAAGAGAGTACTTTGCAGTCCCGAAAAACTTGAAGCTCCTTGCAGT CCCGTTATTCGAACTCTACGACAATGTGCAGTCAATCACCTGGCTTCGAGATAAACAACGTCCTCATTTCCACTCGTTGGCCAGCATCTGTAGAACTACG AGATTCCGCGAACAGAGTGCATCTCGTGGCCATTTGAATCGGAGCCTAAGCAGACCTGAAGACAGCAAACTTGTTCTGCGTTTGATTCTTTGCTGGCTTT TGGGAGGTCAAATGAAATGA
AA sequence Show only first row Show all	>Lus10038867 pacid=23150628 polypeptide=Lus10038867 locus=Lus10038867.g ID=Lus10038867.BGIv1.0 annot-version=v1.0 MVVGPAVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENGILCCRYVRISDT LLLKSYSRLLLLLSTEIEGLKRKLTSKLGANSPTLVPDWQECKKLYIVHLSEREYFAVPKNLKLLAVPLFELYDNVQSITWLRDKQRPHFHSLASICRTT RFREQSASRGHLNRSLSRPEDSKLVLRLILCWLLGGQMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	0	1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	7.4	0.8184
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	9.8	0.7918
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	9.8	0.8167
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	11.5	0.7665
AT5G09390			CD2-binding protein-related (....		Lus10009320 [exp]	12.0	0.7608
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	15.9	0.7509
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	22.2	0.7492
AT3G27930			unknown protein		Lus10008782 [exp]	23.3	0.7624
AT1G17500			ATPase E1-E2 type family prote...		Lus10008473 [exp]	24.0	0.7629
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	25.0	0.7436

Compare expression of checked genes

Lus10038867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.