Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48890 233 / 2e-77 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 224 / 2e-74 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT2G24940 101 / 9e-28 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT4G14965 75 / 4e-16 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014988 [exp] 363 / 2e-129 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 305 / 5e-106 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 303 / 3e-105 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038356 [exp] 162 / 2e-50 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10002241 [exp] 104 / 8e-29 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 107 / 2e-27 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10018026 [exp] 69 / 6e-14 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10034799 [exp] 62 / 1e-12 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10042022 [exp] 59 / 4e-10 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137800 [exp] 273 / 1e-93 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 268 / 8e-92 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G125100 [exp] 171 / 9e-54 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.018G016900 [exp] 107 / 4e-30 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 105 / 2e-29 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.016G022700 [exp] 67 / 2e-13 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10038868 pacid=23150508 polypeptide=Lus10038868 locus=Lus10038868.g ID=Lus10038868.BGIv1.0 annot-version=v1.0 ATGGTGGCTCAGCTATGGGAGACTGCACAGGAAGCAATCCTGACCTACACAGGTCTAACTCCCGCCACTTTCTTCACAGTCATCGCCTTTGGTGTAGCTC TCTACTATCTGGTCTCTGGTATGTTCGGGTCATCGGATCCTCCGCCTAGACCCAGAAGCTTCGAGGAGCAAGTCGAGCCTCTCCCCCCTCCAGTTCAGTT GGGTGAAATTAGTGAAGATGAGCTGAAACAGTATGATGGGTCTGACCCTAAGAAGCCCTTGCTCATGGCTATCAAGAGCCAGATCTATGACGTCTCCCAA AGCAGGATGTTCTATGGTCCTGGCGGGCCATACGCTTTATTTGCCGGAAAAGATGCAAGCAGAGCGCTTGCGAAGATGTCCTTCGAAGACAAGGACCTGA CCGGTGACATCTCGGGCCTCGGTCCGTTCGAGCTGGACGCTCTTCAAGACTGGGAGTACAAGTTCATGAGCAAGTATGTGAAAGTAGGTACTGTCAAGAA AGAAGAAGTCCCGGTAACCGACGGAGCATCCAGCGAACAACCACCAGCTGAAAGTGCTGATGATGCTGCTGATAAGCCTGCGGTCGAAGCTGATGATCAT GATGCCAAACCAGCTGAAGTCGGTCCATCAGGCGACGAGTCGAAAGAGGAGTGA
AA sequence Show only first row Show all	>Lus10038868 pacid=23150508 polypeptide=Lus10038868 locus=Lus10038868.g ID=Lus10038868.BGIv1.0 annot-version=v1.0 MVAQLWETAQEAILTYTGLTPATFFTVIAFGVALYYLVSGMFGSSDPPPRPRSFEEQVEPLPPPVQLGEISEDELKQYDGSDPKKPLLMAIKSQIYDVSQ SRMFYGPGGPYALFAGKDASRALAKMSFEDKDLTGDISGLGPFELDALQDWEYKFMSKYVKVGTVKKEEVPVTDGASSEQPPAESADDAADKPAVEADDH DAKPAEVGPSGDESKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	0	1
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	3.3	0.7584
AT3G32930			unknown protein		Lus10013750 [exp]	4.7	0.6978
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10014798 [exp]	8.7	0.7339
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	12.2	0.7204
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	14.5	0.7558
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	15.2	0.7311
AT5G44710			unknown protein		Lus10001221 [exp]	15.9	0.6813
AT2G21290			unknown protein		Lus10018053 [exp]	17.0	0.7180
AT1G01170			Protein of unknown function (D...		Lus10042373 [exp]	19.2	0.7159
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10019939 [exp]	20.4	0.6521

Compare expression of checked genes

Lus10038868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.