Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52230 76 / 5e-14 MBD13 methyl-CPG-binding domain protein 13 (.1.2) AT3G46580 47 / 9e-06 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59380 45 / 4e-05 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014989 [exp] 930 / 0 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10027447 [exp] 55 / 5e-08 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10005748 [exp] 52 / 4e-07 ND 36 / 0.009 Lus10005460 [exp] 43 / 0.0002 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10004963 [exp] 44 / 0.0003 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140100 [exp] 96 / 2e-20 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.012G138300 [exp] 94 / 1e-19 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2) Potri.001G240100 [exp] 43 / 0.0002 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10038869 pacid=23150453 polypeptide=Lus10038869 locus=Lus10038869.g ID=Lus10038869.BGIv1.0 annot-version=v1.0 ATGGACGACTCGAGCCCCGACGACTGGCTTCCGGAAGGATGGAGAGTTGAGGTCCACGTTCGGAAGAACGGTAGAAAGGACAAGTGGTATTTTCCTCCAA CTGGTGAAGCTAAATTCTTCTCTAAGCTCGAGGTAACTCGATATCTAAAACGCATCAATTCGAGCAACAATGGTAACAATGACACCAGTCCGGAAAATAA AAGCTGGAGCAGCAAGAACAGCACTAGAAGCTGCAATAACGACGAGGTCGTCGACAACACAGTCAATAATACTAAGATCAGCAGCAAGGCCGATACGGCT GAGGGTATCCATAGTCACCATGCTGTCAGCAATACTAGTAGCAAATCCGTCAGTGTGATGGATGCTGATAACGTCACGGTCACCCCCACCTTCAAGAATA ACAGCATTACTGGCAGCAAAATCTTCGGTGTGGCTGATGCTAGCAACAATCTCAATGCCATCACCTCCACCTCCAAGAATCACAACGATGTTGAGGAGAG TACTCAGGTCGCCAACAGTGAAGAGAAGGAAGAAAATGGCACTCCTATAAAGTCTTCTAAAAAGGTAACCTTCGAGAAGAAAAAAGCTGAAGGGTTACCA CCAGGATGGACAAAGGAAGTCAAACTAACAAAAAAGGGCCGGAAAACCCGAAGAGATCCGTATTATACTGATCCTGAAGGTAACTACACGTTCCGCTCTT TGAGAGATGCTCTCCGGTACATCCAAACTGGGGAGCCTGGAAAACTAGCAATCAAGCGGAGGGAAGCTAGGAACGATGAAGATTCAGAAGATGATCAAAC ACCAGCTTCAGCCAAGAAACAGAAGCTGGGGACTGATGACGTGGCAAATGGAACTGCAATAACTCCAGCATCAAAAGTCCTCCCAGATATGCCGGCAGCT GAACACTACGATAGCTCGAAAGTGTCCGAAGTAGTAGTGGCTCCGGTACAGGCAATGCAAGATGGGGAAACTGACCGGAGCCCGAGCCTGGAGGTAATTG AAGTAACTCAAGAAGCTGAGGAAGAACACAGTACTGGCAAGTCCAAGAAGAAGAAGAAGAAGAAGAAGAGAAACGTACAGCTTCCTCTCCGTTCCTCCAA GCGACTTGCTCGTGTTAAACTTTTGAGCGAGATGAATGCCACTGTCTCCCTCGATTCTGCTACCTCGGTTCTCGATACACAGCTTCCCGGGAAAACAGTG GTTAAGCAGTCAATTGAGACGACTGTGAATGCAAGTGAGGAGTCTTGTGAAGCAAGGAAACCGGCACCGAGGTCGAATAAGAGCGAGCAGCCTGTCGACA ACTGCGCTCCAAACGAGATCGTTCCGATGGAAGAAAGCAGCAGCAAGAAACCTGCAGCGGAGACGCCTATCGACCTTCCCATGGGGGAGCTATGGGAAGA TCCATGCATTGCATTTGCAATAAAAACCCTAACCGGGTCACTTGATGAACCGGATAACAACATGCCAGTAGGGCCGAACAGTAACCGATTTGTCGATTCA GCCAATGAGAAGTCAAAAGGAACTACTATCCCGCCTCAAGAAAAGAAGAACCTTATTTCTACTGCTGCAACATCGAATCGGAAACTCGAACCGGTCAATA CCCCACCACTCAACTTGTCTGCGGAATATACATGGGCGGACGACCCCTGCATCGAATTCGCTATCAAGACTCTAACCGGTGCAATCCCGCTGGATTCCGA TCTCTTCAAGCAGGACCCGAGACCGAATTATTCTCCTGTCTTTCACCAGCCTACAGCAGTTTCGCCTCCAGTGTTAGCTCAACCTTCCATCATAGACCCG AAGAACAAGAAGTACCAGAGTAATACTAATAGCAGCAGCGGTAGCATACCATCGGTGCTACCATCGGCGACGAAAGACGAAAAAGCGAGTTATGAGAAGC CAGAAGAAGGCAATGTAGGGTGGTTGTTGGTTTAA
AA sequence Show only first row Show all	>Lus10038869 pacid=23150453 polypeptide=Lus10038869 locus=Lus10038869.g ID=Lus10038869.BGIv1.0 annot-version=v1.0 MDDSSPDDWLPEGWRVEVHVRKNGRKDKWYFPPTGEAKFFSKLEVTRYLKRINSSNNGNNDTSPENKSWSSKNSTRSCNNDEVVDNTVNNTKISSKADTA EGIHSHHAVSNTSSKSVSVMDADNVTVTPTFKNNSITGSKIFGVADASNNLNAITSTSKNHNDVEESTQVANSEEKEENGTPIKSSKKVTFEKKKAEGLP PGWTKEVKLTKKGRKTRRDPYYTDPEGNYTFRSLRDALRYIQTGEPGKLAIKRREARNDEDSEDDQTPASAKKQKLGTDDVANGTAITPASKVLPDMPAA EHYDSSKVSEVVVAPVQAMQDGETDRSPSLEVIEVTQEAEEEHSTGKSKKKKKKKKRNVQLPLRSSKRLARVKLLSEMNATVSLDSATSVLDTQLPGKTV VKQSIETTVNASEESCEARKPAPRSNKSEQPVDNCAPNEIVPMEESSSKKPAAETPIDLPMGELWEDPCIAFAIKTLTGSLDEPDNNMPVGPNSNRFVDS ANEKSKGTTIPPQEKKNLISTAATSNRKLEPVNTPPLNLSAEYTWADDPCIEFAIKTLTGAIPLDSDLFKQDPRPNYSPVFHQPTAVSPPVLAQPSIIDP KNKKYQSNTNSSSGSIPSVLPSATKDEKASYEKPEEGNVGWLLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10038869 [exp]	0	1
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10014989 [exp]	1.0	0.8774
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	29.9	0.8264
AT1G79060			unknown protein		Lus10031795 [exp]	32.4	0.8237
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	38.2	0.7237
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	38.5	0.8109
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008533 [exp]	40.6	0.8047
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	44.6	0.8049
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	58.7	0.7939
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	59.0	0.7951
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	75.2	0.7870

Compare expression of checked genes

Lus10038869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.