Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 327 / 2e-113 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT1G70490 124 / 2e-34 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 124 / 2e-34 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 124 / 2e-34 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 124 / 2e-34 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 123 / 3e-34 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 123 / 5e-34 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 122 / 3e-33 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 120 / 6e-33 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G18390 119 / 3e-32 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014991 [exp] 410 / 3e-146 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10005749 [exp] 391 / 8e-139 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10027446 [exp] 361 / 3e-127 AT5G52210 314 / 1e-110 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 126 / 5e-35 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 127 / 6e-35 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10030884 [exp] 124 / 3e-34 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 124 / 2e-33 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 127 / 4e-33 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10026383 [exp] 119 / 2e-32 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138500 [exp] 353 / 7e-124 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.015G140400 [exp] 349 / 2e-122 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 125 / 5e-35 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 124 / 2e-34 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 124 / 2e-34 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 124 / 2e-34 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 124 / 2e-34 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 124 / 2e-34 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 124 / 2e-34 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 122 / 6e-34 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10038871 pacid=23150356 polypeptide=Lus10038871 locus=Lus10038871.g ID=Lus10038871.BGIv1.0 annot-version=v1.0 ATGGCAGCGGGACCCGATTACGTGGCGCGATCCGAGGTGGAAGGGGTAGTATCGGGAATTGGTTATTTGACCGGAGTGAAGAAAACAAGGATTGTTGGAA GGAGAAGAAGTAGTACTGTAAAGAAGAAGCAAGAAGAAGCAGCTCAGAGCTCAGCCGACTCGGAACTCCGGCGCGATCTCCGTCGTGTGCCGCAGCTATC TGTAAGCCTTGCGATGCTGATTGTGTATCATCTTGTCAGGATATTCTGGTTGAACGATTTCCATTTGATTAGTACTTTGCTGTTCAGGATCGTCGATCTC TATGGTGTTGTGAAGGAACTGTCGATTCGATTACTCGATTCGGGAGACATGTTCTCCTTGTTCTATGGCCTGTACAAGCACATGTTCAGCAAGACAGAGT TTCATGTGCTCATTCTGGGGATCGATAAGGCCGGGAAAACAACCTTGCTCGAAAAGTTGAAGACGGTATACTCGAACTCAGAAGGCCTCCCCCCTGATCG AATCGTCCCAACCGTCGGACTCAACATTGCTCGCCTCGAAGTTTCGAATTCCAAACTCGTGTTCTGGGACCTTGGAGGCCAGATTGGACTGCGCTCGATT TGGGAGAAGTACTACGAAGAAGCGCATGCTGTGATATTCGTAATCGATGCTGCTTCCCCTTCCCGTTTCGAAGATTCGAAATCTGCTCTAGAGAAATTAC TTAGGCACGATGATCTTCAAGGCGCCCCTCTTCTGATACTGGCAAACAAACAGGACCTTCCGGACGCTGTAACCACGGACGAACTGGGCAGATACTTGGA CCTCAAGAAGCTGGACGAAAGAGTTTCTATGTACGAAGCTGTTTCAGCTTACGACGGGTTGGGCATCAAAGGAAGCCTGGAATGGCTAGTCGAGTCAATG GAACGGAGTAAGAGAACCGAAACGCTTAGACTTCGTGCAGGAATGAACGGTGCTAGCATCTAG
AA sequence Show only first row Show all	>Lus10038871 pacid=23150356 polypeptide=Lus10038871 locus=Lus10038871.g ID=Lus10038871.BGIv1.0 annot-version=v1.0 MAAGPDYVARSEVEGVVSGIGYLTGVKKTRIVGRRRSSTVKKKQEEAAQSSADSELRRDLRRVPQLSVSLAMLIVYHLVRIFWLNDFHLISTLLFRIVDL YGVVKELSIRLLDSGDMFSLFYGLYKHMFSKTEFHVLILGIDKAGKTTLLEKLKTVYSNSEGLPPDRIVPTVGLNIARLEVSNSKLVFWDLGGQIGLRSI WEKYYEEAHAVIFVIDAASPSRFEDSKSALEKLLRHDDLQGAPLLILANKQDLPDAVTTDELGRYLDLKKLDERVSMYEAVSAYDGLGIKGSLEWLVESM ERSKRTETLRLRAGMNGASI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10038871 [exp]	0	1
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	4.9	0.7214
AT3G22040			Domain of unknown function (DU...		Lus10007504 [exp]	17.2	0.6686
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	20.1	0.7054
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	23.0	0.7188
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	25.4	0.6892
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	26.3	0.7120
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	28.3	0.6931
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	34.4	0.7086
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	35.6	0.7142
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	36.8	0.6982

Compare expression of checked genes

Lus10038871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.